Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2117
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin (...    28   4.2  
Z99288-1|CAB16545.2|  339|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical ...    27   7.4  
U41106-3|AAA82411.1|  261|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 301 NKFTLQLIFISDPLWKEFIKQNALNHDRVVYPRF 402
           N+F +   F   PLWK+FI    L    +VYP F
Sbjct: 121 NRFRIICKFSWVPLWKKFITPGFLPGQYIVYPSF 154


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 301 NKFTLQLIFISDPLWKEFIKQNALNHDRVVYPRF 402
           N+F +   F   PLWK+FI    L    +VYP F
Sbjct: 121 NRFRIICKFSWVPLWKKFITPGFLPGQYIVYPSF 154


>AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin
           (drosophila peroxidase)homolog protein 1 protein.
          Length = 1285

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 353 NSFHNGSEMKINCNV 309
           NSF  GSE+K+NC V
Sbjct: 324 NSFREGSEVKVNCEV 338


>Z99288-1|CAB16545.2|  339|Caenorhabditis elegans Hypothetical
           protein ZK262.1 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 301 NKFTLQLIFISDPLWKEFIKQNALNHDRVVYP 396
           N+F     F   P WK+FI    L +  +VYP
Sbjct: 121 NRFNTFCNFFWVPFWKKFISPLFLPYQYIVYP 152


>AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical
           protein F13H6.4 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 328 ISDPLWKEFIKQNALNHDRVVYPRFE 405
           ++D +W++F   N   H R+ YP+ E
Sbjct: 344 VTDEIWEKFNLNNPERHFRISYPKCE 369


>U41106-3|AAA82411.1|  261|Caenorhabditis elegans Hypothetical
           protein W06A11.3 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 220 SEANFVRASIKKRINVRDY*MERLK*INKFTLQLIF 327
           SE NFV  S+K ++  RDY +  +  +N   + +++
Sbjct: 75  SEKNFVPVSVKIKVGARDYLLHFVDVLNNPHIDVVY 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,177
Number of Sequences: 27780
Number of extensions: 200762
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)