Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2117
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.3  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 232 SSLQTFNRIK---CFFFFNLNYSALLRHISN 149
           S +  ++RI    CF  FNL Y  +  HIS+
Sbjct: 402 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISD 432


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 232 SSLQTFNRIK---CFFFFNLNYSALLRHISN 149
           S +  ++RI    CF  FNL Y  +  HIS+
Sbjct: 402 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISD 432


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 181 NYSALLRHISNTEDT 137
           NY+ L+R +SN  DT
Sbjct: 31  NYNRLIRPVSNNNDT 45


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 311 RYN*FSFPTHCGKNSLNKMR 370
           RY   +FP+ CGK +L  M+
Sbjct: 12  RYITAAFPSACGKTNLAMMK 31


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -2

Query: 217 FNRIKCFFFFNL----NYSALLRHISNTEDTER 131
           F+   CF  F       Y+  LRH++ TED+ +
Sbjct: 154 FDEQTCFMKFGSWTYDGYTVDLRHLAQTEDSNQ 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,760
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)