Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2116
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...   118   4e-28
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    28   0.75 
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    28   0.99 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.3  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   7.0  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.0  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   7.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.2  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.2  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score =  118 bits (285), Expect = 4e-28
 Identities = 56/112 (50%), Positives = 81/112 (72%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETAEVVIIDMADPTN 335
           MAQ LPIRF E LQL +VGI P+S  F  +T+ESDK++CVR+      +VVI+D+ DP+N
Sbjct: 1   MAQQLPIRFSEVLQLASVGIQPSSFGFANVTLESDKYVCVRDNPNGVNQVVIVDLEDPSN 60

Query: 336 PIRQPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTE 491
            +R+PISADS I++P  K+IALK      AQ+ LQ+F++E K+K+ ++ M +
Sbjct: 61  VLRRPISADSVILHPKKKIIALK------AQRQLQVFDLEAKAKINSYVMNQ 106


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 384 SKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTETLFS 503
           S  +A KG   V  + T+ + NI+   K+ AH    ++F+
Sbjct: 341 SASLANKGATAVTIKDTIMVINIQSNRKISAHGFLASIFA 380


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = -3

Query: 380 WIHDSRVGT-DWLSNWICWIC 321
           W+  S  G  DW  NW+ W C
Sbjct: 12  WVIQSVYGAWDWAKNWVFWTC 32


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 181 FKNIYSLQMWESILLLFLSTLSP 249
           FKN+ S + W  + L F ST++P
Sbjct: 157 FKNLLSEEKWPHVWLKFGSTIAP 179


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 178 RIGNTCAMFIDHSVLHKPKTKKRAT 104
           ++GN   M + H ++H P T+ RAT
Sbjct: 12  KVGN---MLLQHRIVHAPMTRLRAT 33


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 189 HLQLTNVGINPASISFNTLTMESDKFICVREKVGETAEVVIIDMADPT 332
           HL+L    INP+ +  NT   + D+        G T E V +   DPT
Sbjct: 227 HLRLVGDSINPSYVYKNTNVSDPDEGNMYTSTEGNT-EAVNVFYYDPT 273


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 287 NLLANTDKLVRFHGESVERNRSRIDSHI 204
           +LL+NTD  +R   ES   +  R+ SHI
Sbjct: 303 HLLSNTDTEIRLLFESDNESLRRLSSHI 330


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
 Frame = -3

Query: 512  STSRKQCFGHGVRLHFGFHL-DIENLKCFLSFNTSF-AFQSNDFTSWIHDSRVGTDWL-- 345
            ST+  + F H V  HF   +  + N   F S N S+   Q  + + +I  + +G D    
Sbjct: 824  STADGKDFTHSVD-HFLLRVGSLNNPIVFSSANYSYDLLQKENNSVYIKHAAIGADMFRY 882

Query: 344  -----SNWICWICHINNDNFCSLT 288
                 S W  W  +  N+ +C+L+
Sbjct: 883  SLDFGSTWTEWQTYDGNNTYCNLS 906


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 226 LFLSTLSPWNRTSLSVFARRL 288
           LFLS++SP +R S++ F R L
Sbjct: 365 LFLSSISPSHRYSVAFFLRSL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,790
Number of Sequences: 5004
Number of extensions: 44269
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)