Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2116
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 113 6e-26
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 113 6e-26
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 29 1.7
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 29 2.3
04_04_0764 - 27889257-27889394,27889472-27890128,27904516-279045... 29 2.3
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369 29 2.3
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 29 3.1
01_06_0211 + 27571069-27571128,27571563-27571706 28 4.0
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 28 5.3
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 27 7.1
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 27 9.3
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 113 bits (273), Expect = 6e-26
Identities = 55/107 (51%), Positives = 78/107 (72%)
Frame = +3
Query: 171 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETAEVVIIDMADPTNPIRQP 350
PI +E L LT++GI P ++F +TMES+K+ICVRE + + VVI+DMA P P+R+P
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRP 65
Query: 351 ISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTE 491
I+ADSA+MNP ++++ALK + Q LQIFNIE K+K+K+H M E
Sbjct: 66 ITADSALMNPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPE 112
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 113 bits (273), Expect = 6e-26
Identities = 55/107 (51%), Positives = 78/107 (72%)
Frame = +3
Query: 171 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETAEVVIIDMADPTNPIRQP 350
PI +E L LT++GI P ++F +TMES+K+ICVRE + + VVI+DMA P P+R+P
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRP 65
Query: 351 ISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTE 491
I+ADSA+MNP ++++ALK + Q LQIFNIE K+K+K+H M E
Sbjct: 66 ITADSALMNPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPE 112
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 273 VREKVGETAEVVIIDMADPTNPIRQPISADSAIMNPASKVIALKGKAG 416
+ EKV E+ +D P+ + +PI ++ PA KV+AL G +G
Sbjct: 349 ILEKVTGNIEIREVDFMYPSR-VDKPILRSFSLSIPAGKVVALVGSSG 395
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -1
Query: 361 SALIGCRIGFVGSAISIMTTSAVSP---TFSRTQINLSDSMVRVLKEIEAGLIPT----F 203
SAL+G IGF+G SI T A S + I ++ V + EA +IP F
Sbjct: 196 SALLGMDIGFMGPNYSISTACATSNYCFYAAANHIRRGEADVMIAGGTEAAIIPIGVGGF 255
Query: 202 VSCK 191
V+C+
Sbjct: 256 VACR 259
>04_04_0764 -
27889257-27889394,27889472-27890128,27904516-27904572,
27904935-27905032,27905047-27905113
Length = 338
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 375 NPASKVIALKGKAGVEAQKTLQ 440
NPA KV+A+ AG+E+QK L+
Sbjct: 213 NPAEKVVAVPMTAGIESQKLLK 234
>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
Length = 672
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 276 REKVGETAEVVIIDMADPTNPIRQPI 353
RE+ GE A+ ++ID+A +PI +P+
Sbjct: 629 RERYGEIAQALLIDLAQKGDPILKPM 654
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 299 CSLTNLLANTDKLVRFHGESVERNRSRIDSHICKL 195
CS+ +LL D+++R G ++ R++ + +HI KL
Sbjct: 528 CSVEDLLIEMDRIMRPQGYAIIRDKVAVINHIKKL 562
>01_06_0211 + 27571069-27571128,27571563-27571706
Length = 67
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 166 YYRYGFKNIYSLQMWE 213
Y+ YG+ NI+ L MWE
Sbjct: 7 YHTYGYNNIFILDMWE 22
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 452 DIENLKCFLSFNTSFAFQSNDFTSWIHDSRVGTDWLSNWICWICH 318
D E F+ FN+SF + DF +S TD + + +ICH
Sbjct: 340 DFEGHALFIGFNSSFFLREEDFPMLTPNSVYCTD---DTVTYICH 381
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 279 EKVGETAEVVIIDMADPTNPIRQPISADSAIMNPASKVIALKGKAG 416
E G++ VV+IDM + + + IS ++ ++ A +V A K K+G
Sbjct: 34 EACGKSVSVVLIDMHNCSLDDKIRISLEAQVVEQAVEVAASKKKSG 79
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 318 MADPTNPIRQPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKM 470
+AD +NPI ++ SAI+ S V G+A + AQ + I E S +
Sbjct: 348 LADASNPIMAQVAFLSAIV--GSDVAVAAGQAAISAQSQVDISASETDSSI 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,621
Number of Sequences: 37544
Number of extensions: 257086
Number of successful extensions: 737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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