Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2116
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   126   7e-30
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    30   1.2  
AF040641-4|AAB94945.1|  451|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF040641-3|AAT81205.1|  509|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score =  126 bits (305), Expect = 7e-30
 Identities = 63/108 (58%), Positives = 81/108 (75%)
 Frame = +3

Query: 168 LPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETAEVVIIDMADPTNPIRQ 347
           LPI+F EHLQL N GI   +I+F+ +TMESDK I VRE +G+  +VVIID+AD  NP R+
Sbjct: 3   LPIKFHEHLQLPNAGIRVPNITFSNVTMESDKNIVVREMIGDQQQVVIIDLADTANPTRR 62

Query: 348 PISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTE 491
           PISADS IM+P +K++ALK      + KTLQIFNIE+K+K+KAH   E
Sbjct: 63  PISADSVIMHPTAKILALK------SGKTLQIFNIELKAKVKAHQNVE 104


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 191  FTAYKCGNQSCFYFFQHSHHGIGQVYLCSREGW*DCRSCHY*YGRSNKSNSTTNQCRLCY 370
            +T   C N    Y+ +     + Q    +  GW +  SCH   G S   N  T+ C  C 
Sbjct: 1504 YTGLSCQNPEVGYYRKKHREYLNQADDIALIGWSEPCSCH---GHSQTCNPDTSVCTDCE 1560

Query: 371  HES 379
            H +
Sbjct: 1561 HNT 1563


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 191  FTAYKCGNQSCFYFFQHSHHGIGQVYLCSREGW*DCRSCHY*YGRSNKSNSTTNQCRLCY 370
            +T   C N    Y+ +     + Q    +  GW +  SCH   G S   N  T+ C  C 
Sbjct: 1504 YTGLSCQNPEVGYYRKKHREYLNQADDIALIGWSEPCSCH---GHSQTCNPDTSVCTDCE 1560

Query: 371  HES 379
            H +
Sbjct: 1561 HNT 1563


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 191  FTAYKCGNQSCFYFFQHSHHGIGQVYLCSREGW*DCRSCHY*YGRSNKSNSTTNQCRLCY 370
            +T   C N    Y+ +     + Q    +  GW +  SCH   G S   N  T+ C  C 
Sbjct: 1504 YTGLSCQNPEVGYYRKKHREYLNQADDIALIGWSEPCSCH---GHSQTCNPDTSVCTDCE 1560

Query: 371  HES 379
            H +
Sbjct: 1561 HNT 1563


>AF040641-4|AAB94945.1|  451|Caenorhabditis elegans Hypothetical
           protein D1069.3a protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 166 YYRYGFKNIYSLQMWESILLLFLSTLSPWNRTSLSVFARRLV 291
           YY+ G   +Y+LQ     + L+L  LS     S+S+F   L+
Sbjct: 73  YYKEGVLRLYALQFVPGFVSLYLLALSKKQHKSISLFETFLI 114


>AF040641-3|AAT81205.1|  509|Caenorhabditis elegans Hypothetical
           protein D1069.3b protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 166 YYRYGFKNIYSLQMWESILLLFLSTLSPWNRTSLSVFARRLV 291
           YY+ G   +Y+LQ     + L+L  LS     S+S+F   L+
Sbjct: 73  YYKEGVLRLYALQFVPGFVSLYLLALSKKQHKSISLFETFLI 114


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 377 IHDSRVGTDWLSNWICWI-CHINNDNFCSLTNLLANTDKLVRFHGESVERNRSRIDSH 207
           I D    T WL   +C     ++    CSL N+L++  +++ F  ES   N +    H
Sbjct: 159 ISDRSQHTTWLQKILCSNRIEVSMYTNCSLPNILSSNCEIISFRAESTPSNLNLFLKH 216


>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 385 LAGFMIAESALIGCRIGFVGSAISIMTTS 299
           +AGFM     L+ CRI   G AI +M  S
Sbjct: 104 IAGFMFRYYVLVPCRIALFGIAIVLMIVS 132


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 385 LAGFMIAESALIGCRIGFVGSAISIMTTS 299
           +AGFM     L+ CRI   G AI +M  S
Sbjct: 161 IAGFMFRYYVLVPCRIALFGIAIVLMIVS 189


>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
 Frame = -3

Query: 350 WLSNWICWICH-----INNDNFCSLTNLL-ANTDKLV 258
           WLS++  W+CH     I     CS  NL+  N DKL+
Sbjct: 79  WLSHFNLWLCHPYYVIIWTCQMCSCLNLVWLNVDKLI 115


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
 Frame = -3

Query: 350 WLSNWICWICH-----INNDNFCSLTNLL-ANTDKLV 258
           WLS++  W+CH     I     CS  NL+  N DKL+
Sbjct: 79  WLSHFNLWLCHPYYVIIWTCQMCSCLNLVWLNVDKLI 115


>U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical
           protein F38A5.2a protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 240 TLTMESDKFICVREKVGETAEVVIIDMADPTNPIRQPISADSAI 371
           +LT+ S K + V     ETAE  II +AD T+   + +  D+ +
Sbjct: 39  SLTINSKKGLSVVGGASETAEQSIISLADSTSNFDEHVGDDAEL 82


>U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical
           protein F48E8.4 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 467 FGFHLDI-ENLKCFLSFNTS-FAFQSNDFTSWIHDSRVGTDWLSNWICW 327
           F FH+++  ++  F    T  F  +  DFT W +D  +   ++ ++I W
Sbjct: 615 FIFHMNLARDMSRFARLMTEVFVVKIQDFTKWRNDKPIAERFVEDFIVW 663


>Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical
           protein T05D4.4 protein.
          Length = 651

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 380 WIHDSRVGTDWLSNWICWICH 318
           W H   VG DWL+  + W  H
Sbjct: 598 WYHPESVGVDWLNGQLQWGGH 618


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 240 TLTMESDKFICVREKVGETAEVVIIDMADPTNPIRQP 350
           T+T +  KFI   +K GE  EVV +D  D +  I  P
Sbjct: 229 TITADGLKFIKEAKKNGELYEVVFLDACDNSKIIPCP 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,157,247
Number of Sequences: 27780
Number of extensions: 243976
Number of successful extensions: 818
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)