Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2116
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.21 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 165 VLPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETAEVVIIDMADP 329
           +L +  +  + L N G  P ++S+N           + EK  +   V ++D  DP
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYNVAVPTKS----ILEKKPDVTTVELVDATDP 131


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 318 MADPTNPIRQPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNI 452
           +A P NP  QP++    ++   SK  +   +  VE  K +  F++
Sbjct: 217 LACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSL 261


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = +3

Query: 165 VLPIRFQEHLQLTNVGINPASISFN----TLTMESDKFICV-----REKVGETAEVVIID 317
           +L +  +  + L N G  P ++S+N    T ++   K   V      E  G+T   V   
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYNVAVPTKSILEKKPELVDATDPGEHNGDTVTDVEAG 140

Query: 318 MADPTNPIRQPIS 356
           +A  TNP+   IS
Sbjct: 141 LASRTNPLDDSIS 153


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 326 ICHINNDNFCSLTNLLANTDKLVR 255
           ICH N D      +LL+N ++L+R
Sbjct: 14  ICHGNPDAKRLYDDLLSNYNRLIR 37


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 SHCFERQSWC*SSKNTSNFQYRDEIQNEG 475
           S  F+R S C S    S  + R+  +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 SHCFERQSWC*SSKNTSNFQYRDEIQNEG 475
           S  F+R S C S    S  + R+  +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 SHCFERQSWC*SSKNTSNFQYRDEIQNEG 475
           S  F+R S C S    S  + R+  +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 SHCFERQSWC*SSKNTSNFQYRDEIQNEG 475
           S  F+R S C S    S  + R+  +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 SHCFERQSWC*SSKNTSNFQYRDEIQNEG 475
           S  F+R S C S    S  + R+  +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 SHCFERQSWC*SSKNTSNFQYRDEIQNEG 475
           S  F+R S C S    S  + R+  +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,961
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)