Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2110
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   1.3  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    25   4.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   5.4  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    24   5.4  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   5.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   7.1  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    24   7.1  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    23   9.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   9.4  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 276 WIRTQQYYYENDPKRVYYL 332
           WI     YY+ DP+R+++L
Sbjct: 246 WIVENAIYYDADPERIFFL 264


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 209 CCDPAGLLFCSRTHRERSSCLQVDSYSTILL 301
           C   + LL   + HRER+  ++VD Y  + L
Sbjct: 227 CKHASVLLKLIKQHRERNDPIRVDQYMVLFL 257


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +2

Query: 17  QDSVSGRVLAIILL*ISLNKMSVQTDAEKRKQISVRGIVAVENVTEVKKAFNPSCPLHFS 196
           QD +S ++  + L   +LN M   T + +++Q  + G++ + +   + +    +C  HFS
Sbjct: 109 QDYLSIKIWCMYLE-FTLNLMD--TSSFEQEQSELNGVITLTDAHSLFERAYQTCKFHFS 165

Query: 197 ERSKC 211
            +S+C
Sbjct: 166 -KSQC 169


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 284 TNPPGDKM-IFHGVCESKIVIPRGRN 210
           T  PG  + +F G+ + ++V PRG N
Sbjct: 116 TKGPGKPIHLFEGILDGQVVPPRGSN 141


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 236 KIVIPRGRNISIFH*SVMDMTD*TPSLLQSH-FRQQQFL*QISVYA 102
           KI IP   N+S  H +V+D  +   SLL+S+ +  Q+    IS+YA
Sbjct: 249 KIGIPIDWNVSETHPNVLDKWNEFISLLKSNGYLVQEIQLPISLYA 294


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 195 VKDRNVATPRDYYF-ALAHTVKDHLVSRW 278
           + D+ +  P +  F + A TVKD L+S W
Sbjct: 837 ISDQRIPKPSNPEFDSYAQTVKDSLMSGW 865


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 222 RDYYFALAHTVKDHLVSRWIR 284
           RDYY   AH +    V+ W R
Sbjct: 17  RDYYNQSAHRIPQKEVTEWFR 37


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 326 VDSLRIIFIIVLLSTNPPGDKMIFHGVCESKIVIPR 219
           VD +RII  +   +T+    +++F G   SKIVI R
Sbjct: 244 VDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILR 279


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 71  NKMSVQTDAEKRKQISVRGIVAVENVTEVKKAFNPSCPLHFSE 199
           NK      AEKR+ + +RG +    V   +  +N    LH SE
Sbjct: 338 NKRDEAVHAEKRRLLDIRGSIHDRLVCRYENRYN---KLHASE 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,526
Number of Sequences: 5004
Number of extensions: 22955
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)