Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2110
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...    48   2e-06
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...    38   0.002
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   0.93 
04_03_0585 + 17570853-17571404                                         27   5.0  
02_02_0286 - 8589736-8590857                                           27   5.0  
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832...    26   8.7  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +3

Query: 219 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLS 335
           P   +++ A +V+DHLV RW  T  ++++ DPK+ YYLS
Sbjct: 50  PEQAFYSTAESVRDHLVQRWNETYLHFHKTDPKQTYYLS 88


>03_06_0026 -
           31118997-31119113,31119700-31119900,31120032-31120218,
           31120339-31120415,31120738-31120815,31120858-31120974,
           31121047-31121175,31121327-31121479,31121589-31122044,
           31122122-31122239,31122385-31122575,31123140-31123415,
           31123524-31123700,31124040-31124141,31124227-31124459,
           31125563-31125764
          Length = 937

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 177 HVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLS 335
           H  +T V      +P   Y A A +V D L+  W  T  YY   + K+ YYLS
Sbjct: 88  HAEFTPVFSPEHFSPLKAYHATAKSVLDTLIMNWNATYDYYDRTNVKQAYYLS 140


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 50  ILL*ISLNKMSVQTDAEKRKQISVRGIVAVENVTEVKKAFNPSCPLHFSERS 205
           +LL I +  + VQ   + R  +S   +  +EN + V     PSCP HF++RS
Sbjct: 784 VLLCIHVALLCVQESPDDRPLMSSI-VFTLENGSSVALLPAPSCPGHFTQRS 834


>04_03_0585 + 17570853-17571404
          Length = 183

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 212 CDPAGLLFCSRTHRERSSCLQVDSYST 292
           C+P+G +  S THR +  C    SY T
Sbjct: 30  CNPSGAIRSSTTHRCQDCCKAGQSYPT 56


>02_02_0286 - 8589736-8590857
          Length = 373

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 101 KRKQISVRGIVAVENVTEVKKAFNPSCPLHFSERSKCC 214
           K +Q      VAV++  E+ K  +P CP   S ++K C
Sbjct: 21  KAEQHEEEAAVAVKSAAEMMKKSSPCCPRCNSIKTKFC 58


>07_01_0987 +
           8320205-8320472,8321549-8321690,8321773-8321893,
           8322190-8322264,8322784-8322846,8322934-8323086
          Length = 273

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 83  VQTDAEKRKQISVRGIVAVENVTEVKKAFNPSCPLHFSE 199
           ++   + + Q+S    + +EN+ +V   F   CPL F+E
Sbjct: 154 IEKTLKVQAQVSEVKNIMLENIEKVWSTFAVGCPLFFTE 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,022,999
Number of Sequences: 37544
Number of extensions: 135857
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)