Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2110
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical pr...   105   6e-24
U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical pr...   105   6e-24
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    27   4.4  
AF067608-9|AAC17652.1|  367|Caenorhabditis elegans Temporarily a...    26   5.8  

>U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical
           protein T22F3.3b protein.
          Length = 846

 Score =  105 bits (253), Expect = 6e-24
 Identities = 43/54 (79%), Positives = 52/54 (96%)
 Frame = +3

Query: 174 RHVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLS 335
           RH+H++++KDRNVAT RDYYFALA+TV+DHLVSRWIRTQQ+YY+ DPKRVYYLS
Sbjct: 32  RHLHFSIIKDRNVATDRDYYFALANTVRDHLVSRWIRTQQHYYDKDPKRVYYLS 85



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 83  VQTDAEKRKQISVRGIVAVENVTEVKKAFNPSCPLHFS 196
           +  D ++RKQISVRGI  VENV+ +KKAFN    LHFS
Sbjct: 2   ITNDHDRRKQISVRGIAQVENVSNIKKAFNRH--LHFS 37


>U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical
           protein T22F3.3a protein.
          Length = 882

 Score =  105 bits (253), Expect = 6e-24
 Identities = 43/54 (79%), Positives = 52/54 (96%)
 Frame = +3

Query: 174 RHVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLS 335
           RH+H++++KDRNVAT RDYYFALA+TV+DHLVSRWIRTQQ+YY+ DPKRVYYLS
Sbjct: 68  RHLHFSIIKDRNVATDRDYYFALANTVRDHLVSRWIRTQQHYYDKDPKRVYYLS 121



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 83  VQTDAEKRKQISVRGIVAVENVTEVKKAFNPSCPLHFS 196
           +  D ++RKQISVRGI  VENV+ +KKAFN    LHFS
Sbjct: 38  ITNDHDRRKQISVRGIAQVENVSNIKKAFNRH--LHFS 73


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 163 LLYFSHIFDSNNSSDRYLFTLFRVSL 86
           + Y  H +D+NNSSDR +    R +L
Sbjct: 385 MTYLHHSWDANNSSDRKMLDYARSAL 410


>AF067608-9|AAC17652.1|  367|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 344 protein.
          Length = 367

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 249 TVKDHLVSRWIRTQQYYYE-NDPKRV 323
           T K    S W+RTQ YY + N+P +V
Sbjct: 315 TYKAICESEWLRTQPYYMKPNEPPKV 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,286,567
Number of Sequences: 27780
Number of extensions: 134474
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)