Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2110
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   1.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   1.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   4.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   7.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   7.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    20   9.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   9.2  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 204 RNVATPRDYYFALAHTV 254
           +N+ TP DYY+ + HT+
Sbjct: 166 KNITTPWDYYY-IYHTL 181


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 204 RNVATPRDYYFALAHTV 254
           +N+ TP DYY+ + HT+
Sbjct: 181 KNITTPWDYYY-IYHTL 196


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 204 RNVATPRDYYFALAHTV 254
           +N+ TP DYY+ + HT+
Sbjct: 69  KNITTPWDYYY-IYHTL 84


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 303 HNSIVEYESTWRQDDLSRCVREQNSNPAGSQHFDLS 196
           +  + EY+ TW   D+  C     S   GS    L+
Sbjct: 155 YTPVCEYDHTWWPYDILNCTIHIASWSHGSNEIKLN 190


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 294 IVEYESTWRQDDLSRCVREQNSN 226
           IV Y    R DD++ C++++N N
Sbjct: 13  IVSYMMV-RCDDITLCLKQENLN 34


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 333 TNSRLS*DHFHNSIVEYES 277
           T ++L   +FH++ + YES
Sbjct: 31  TRTKLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 333 TNSRLS*DHFHNSIVEYES 277
           T ++L   +FH++ + YES
Sbjct: 31  TRTKLQPTYFHHTYIIYES 49


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 291 QYYYENDPKRVYY 329
           +Y Y N+ K++YY
Sbjct: 97  KYNYNNNCKKLYY 109


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 285 TQQYYYENDPKRVYY 329
           +  YY  N+ K++YY
Sbjct: 314 SNNYYNNNNYKKLYY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,036
Number of Sequences: 438
Number of extensions: 1599
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)