Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2109
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 169 7e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 98 3e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 78 4e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 2e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 47 8e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 6e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 8e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.043
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.100
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.30
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 0.70
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 0.93
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 1.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 2.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.7
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 4.9
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 6.5
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 24 6.5
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 24 6.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 8.6
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 23 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 169 bits (412), Expect = 7e-44
Identities = 75/81 (92%), Positives = 79/81 (97%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 262 RGILTLKYPIEHGIVTNWDDM 324
RGILTLKYPIEHGIV NWDDM
Sbjct: 62 RGILTLKYPIEHGIVNNWDDM 82
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 98.3 bits (234), Expect = 3e-22
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 280 KYPIEHGIVTNWDDM 324
+ PIE GI+ NW DM
Sbjct: 72 QRPIERGIIQNWSDM 86
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 77.8 bits (183), Expect = 4e-16
Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 261
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 262 RGILTLKYPIEHGIVTNWDDM 324
R +L +KYP+E+GI+ ++++M
Sbjct: 62 RSLLQVKYPMENGIIRDFEEM 82
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 2e-07
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 24/99 (24%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 228
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 229 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDM 324
D ++G++A K +L YPI HG + NWD M
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHM 105
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.8 bits (106), Expect = 8e-07
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 280 -KYPIEHGIVTNWDDM 324
+ P E +++NWD M
Sbjct: 83 ARSPFERNVISNWDLM 98
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.0 bits (99), Expect = 6e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 264
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 265 GILTLKYPIEHGIVTNWD 318
G + +K I +G V NWD
Sbjct: 62 G-MEIKNAIRNGWVENWD 78
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 43.6 bits (98), Expect = 8e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 264
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 265 GI--LTLKYPIEHGIVTNWD 318
I + +K +GI+ +W+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWE 81
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.043
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 288
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.100
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 242 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 81
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.30
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 0.70
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -2
Query: 282 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 0.93
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 245 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 129
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 1.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 282 FEGQDTSFALCLISYIRVLLSHTDHHA 202
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 205 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 291
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 3.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 112 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 264
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAG 147
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 132 LAHTGAIVYYQRGNFFVAHLELVF 61
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 243 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTG 118
+Y +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 6.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 139 NRPCTYRSHCLLPTRQ 92
NRP YRSH + TR+
Sbjct: 323 NRPSNYRSHSSMGTRR 338
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 144 CETGLAHTGAIVYYQRGNFFVAHLELVFN 58
C HT +V++Q NF + ELV N
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNN 257
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 182 TIEGNTARGASSPAKPALHIPEPLSTT 102
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 23.4 bits (48), Expect = 8.6
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = -1
Query: 241 LHKSPSVPYRP----SRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 86
LH SPS+ S G RSR + H + RP + S + P +L
Sbjct: 59 LHSSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,647
Number of Sequences: 5004
Number of extensions: 28053
Number of successful extensions: 83
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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