Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2106
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DAF9 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_A7SU43 Cluster: Predicted protein; n=1; Nematostella ve...    31   8.0  

>UniRef50_A6DAF9 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 1026

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 187 KNNVLLFYENLTLFQYRKER*ITFKN*KYNREDINFGCRMHVVS 318
           KN +L+FY N+ +F Y  E    FKN   N E    G ++ +V+
Sbjct: 478 KNFLLIFYSNINIFNYNLEELKNFKNKLSNDEKREHGNKIGLVN 521


>UniRef50_A7SU43 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 328

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 221 PCFNTEKKDKSRLKIKNTIVRTLTSD 298
           PCF++EK +KS   ++ T+V + +SD
Sbjct: 48  PCFHSEKSEKSEKSLQETVVESSSSD 73


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,530,809
Number of Sequences: 1657284
Number of extensions: 6532410
Number of successful extensions: 10936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10934
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)