Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2106
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    27   1.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.0  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    24   8.8  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +2

Query: 221 PCF---NTEKKDKSRLKIKNTIVRTLTSDVGC 307
           PCF     +KKDKSR  I   +V  +    GC
Sbjct: 92  PCFPYARQDKKDKSRAPITARLVANMLQTAGC 123


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 188 FFKHQQFSTLVF*HGTLLRFRVNL 117
           F+ H Q +   F H TLLR+R+NL
Sbjct: 268 FYGHVQANFFFF-HETLLRYRLNL 290


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 277 REDINFGCRMHVVSGWLNDIPAKKLKFNYYNIS*RPKFY*NYYN 408
           +  +  G R+++ S     +PA+KL F + +     K++  YY+
Sbjct: 102 QRSLQLGMRVYIYSS--GSVPAQKLYFEHSDAGNLLKYFSGYYD 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,052
Number of Sequences: 5004
Number of extensions: 30339
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)