Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2106
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.31 
SB_35881| Best HMM Match : DUF718 (HMM E-Value=1.6)                    28   2.9  

>SB_25296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 221 PCFNTEKKDKSRLKIKNTIVRTLTSD 298
           PCF++EK +KS   ++ T+V + +SD
Sbjct: 48  PCFHSEKSEKSEKSLQETVVESSSSD 73


>SB_35881| Best HMM Match : DUF718 (HMM E-Value=1.6)
          Length = 250

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 181 LKKNNVLLFYENLTLFQYRKER*ITFKN*KYNREDINFGC-RMHVVSGWLND 333
           LK+  V  F +   +FQYRKER +     +Y +E   F C R H V  +L +
Sbjct: 44  LKERQVFQFLKEHQVFQYRKERQVF----QYRKEHQVFQCLREHQVFQYLKE 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,632,308
Number of Sequences: 59808
Number of extensions: 196419
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)