Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2105
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    30   0.096
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   3.6  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   4.8  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             24   6.3  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    24   6.3  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 30.3 bits (65), Expect = 0.096
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +2

Query: 236 LTGFGGLKTVKILKKPEPTVGEGEVLILVKACGLNFQDLIVS 361
           ++GF  LK  +  + P+  +  GEVL+ +KA  LN++DLI++
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIIT 50


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 82  TESTDPAGTPAPEKTPDRKW 141
           TE    A  P+ +K PDRKW
Sbjct: 125 TELPYDAHLPSEQKVPDRKW 144


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 137 FRSGVFSGAGVPAGSVLSVILMIGGGW 57
           F  G F G G P GS  S    +GGG+
Sbjct: 441 FPGGGFPGGGFPGGSYNSQGFGMGGGF 467


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 307 LALTNGRLRFFEYLNGLETPE 245
           +ALTNGR+  ++  NG +  E
Sbjct: 1   MALTNGRIEEYDIQNGYQNTE 21


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 318 RIRTSPSPTVGSGFLSILTVLRPPNP 241
           R + SP+ T+    LSI ++L  PNP
Sbjct: 90  RDQWSPALTISKVLLSICSLLTDPNP 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,617
Number of Sequences: 5004
Number of extensions: 21472
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)