Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2105
         (362 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            48   3e-06
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     31   0.37 
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   29   0.85 
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.85 
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     28   2.6  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)                   27   6.0  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   26   8.0  
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                26   8.0  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +2

Query: 221 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLILVKACGLNFQDLI 355
           MR+VVLTG GG   +K+ K   P   +G+V++ V ACG+ F DL+
Sbjct: 39  MRSVVLTGHGGNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLL 83


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 327 AFTRIRTSPSPTVGSGFLSILTVLRPPNPVSTT 229
           A TR+  + +PT+GS F     +L P N V+TT
Sbjct: 700 ATTRVTFNGTPTIGSSFTVASQLLTPDNTVATT 732


>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 527

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 248 GGLKTVKILKKPE--PTVGEGEVLILVKACGLN 340
           GGLK    LK+    P V EG V++ +KACGL+
Sbjct: 301 GGLKGEYELKETFECPQVDEGSVVVKIKACGLD 333


>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 306 SPSPTVGSGFLSILTVLRPPNPVSTTARI 220
           +P PTV S     +T + PP+PV+TT  +
Sbjct: 543 TPKPTVASRPSPAVTTVTPPSPVATTTAV 571


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 221 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLILVKACGLNFQDLI 355
           M+AV+ T  GG +++ I   P P + E EVLI V    LN  D +
Sbjct: 28  MKAVLFTP-GGPESMYIGDAPRPKLKETEVLIRVHFTALNRADTL 71


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 55   IHPPPIIKMTESTDPAGTPAP 117
            + P PI K T  T P GTP+P
Sbjct: 6246 LSPNPISKPTHDTMPKGTPSP 6266


>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
          Length = 1259

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 37  RTLLV*IHPPPIIKMTESTDPAGTPAP 117
           RT L+  HP P  + T  + P GTP+P
Sbjct: 465 RTSLLFTHPHPFSEGTVPSYPRGTPSP 491


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  HPPPIIKMTESTDPAGTPAPEKTP 129
           H PPI K T  + P  +P P + P
Sbjct: 137 HSPPIRKQTPPSKPHPSPTPAQAP 160


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 125 VFSGAGVPAGSVLSVILMIG 66
           VFSG  + +GS+L VIL+IG
Sbjct: 196 VFSGKMLTSGSLLGVILIIG 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,558,744
Number of Sequences: 59808
Number of extensions: 195272
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)