Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2104
         (301 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   0.71 
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   0.71 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   2.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   8.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   8.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    19   8.7  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 0.71
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 24  RLNELFFYFACNYSCRHTSVQTVY 95
           R+ +  F FAC  SC +  V  V+
Sbjct: 311 RIQKALFLFACTNSCMNPVVYGVF 334


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 0.71
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 24  RLNELFFYFACNYSCRHTSVQTVY 95
           R+ +  F FAC  SC +  V  V+
Sbjct: 311 RIQKALFLFACTNSCMNPVVYGVF 334


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 215 NNQHHSMAKQV*LKPE 262
           NN HH +     LKPE
Sbjct: 213 NNMHHILGNTFGLKPE 228


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 230 YGVDYSTFSHS 198
           Y  DYS+ +HS
Sbjct: 211 YSTDYSSLTHS 221


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/29 (20%), Positives = 14/29 (48%)
 Frame = -3

Query: 95  VDSLNTGMATAVIACEIKKQFVQAWSKKK 9
           VD+    + TA++    +   ++ W  +K
Sbjct: 451 VDNAEYALLTAIVIFSERPALIEGWKVEK 479


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 4/26 (15%), Positives = 17/26 (65%)
 Frame = -3

Query: 248  IPVLPYYGVDYSTFSHSTLIIGGETE 171
            +P+L ++G+++   + +  ++ G+ +
Sbjct: 1324 VPLLLFFGLNFLIITQAMFLVVGQLQ 1349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,162
Number of Sequences: 336
Number of extensions: 1326
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)