Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2104
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 31 0.048
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 27 0.59
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 0.78
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 1.8
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 25 2.4
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 25 2.4
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 3.1
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 24 4.2
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 24 4.2
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 24 4.2
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 24 4.2
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 24 4.2
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 24 4.2
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 24 5.5
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 23 7.3
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 23 7.3
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 23 7.3
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 23 7.3
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 23 7.3
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 23 7.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 23 9.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 9.6
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 23 9.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 9.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 9.6
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 30.7 bits (66), Expect = 0.048
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 284 TVEDSHDSLASTIPVLPYYGVDYSTFSHSTLI 189
+V D HDSL + VLP Y + +S S TL+
Sbjct: 221 SVRDCHDSLVTFNRVLPLYTISHSNLSTLTLV 252
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 0.59
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 290 KNTVEDSHDSLASTIPVLPYYGVDYSTFSHS 198
K +E+ D+ ++ +P+L + D+ST HS
Sbjct: 173 KREIEEDDDNTSADVPLLKHSKSDHSTLYHS 203
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 0.78
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 54 CNYSCRHTSVQTVYAFYKGNIQSQSIPTRST--LITILTNTFRFTSYN*SAMAKSRIINT 227
CN++ V V F+ I+ IP S + IL +T+ ++Y+ S +A+S I N
Sbjct: 209 CNHARLEDVVTEVLMFFDSMIRYSVIPKASLYDTVLILCSTY-ISTYSYSKLAQSVIFNL 267
Query: 228 I 230
I
Sbjct: 268 I 268
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 99 RRRQSEHWYGDSCNCMRNKKTIRSSVEQKKKKK 1
++++ EH D + + +K+ S E+KKKKK
Sbjct: 197 KKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKK 229
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 98 GVDSLNTGMATAVIACEIKKQFVQAWSKKKKK 3
G+ SL T A ++ E+K++F + W K KKK
Sbjct: 98 GLRSLTTVWAEH-LSEEVKRRFYKNWFKSKKK 128
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 98 GVDSLNTGMATAVIACEIKKQFVQAWSKKKKK 3
G+ SL T A ++ E+K++F + W K KKK
Sbjct: 98 GLRSLTTVWAEH-LSEEVKRRFYKNWFKSKKK 128
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 3.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 54 CNYSCRHTSVQTVYAFYKGNIQSQ 125
C++ R VQ V++FYK ++ +
Sbjct: 216 CDFVVREVLVQIVHSFYKAHLDKE 239
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 24.2 bits (50), Expect = 4.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -3
Query: 290 KNTVEDSHDSLASTIPVLPYY----GVDYSTFSHSTLIIGGE-TEGISEDSYKCASSRN 129
KNT +HD +T P+L Y+ YS S T+ + + GI E+++ + N
Sbjct: 515 KNTTAGNHDVDNNTPPLLVYFPNYPWTYYSNISTFTMSMDDKMANGILENAFMSTTQNN 573
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 4.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 290 KNTVEDSHDSLASTIPVLPYYGVDYSTFS--HSTLIIGGETEGISEDSYKCASSRNG 126
+ +E ++ TI LP Y++ + ++ L E G S +YKC SS +G
Sbjct: 193 RERIERKSEASRQTISALPSIISSYTSLAPLNTKLYRYKEQIGFSSWTYKCTSSIDG 249
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 51 ACNYSCRHTSVQTVYAFYKGNIQSQS-IPTRSTLI 152
ACN CR + Y Y ++Q+ S +P S L+
Sbjct: 42 ACNKHCRQYCTKPGYDIYGNSVQTPSNVPYYSCLM 76
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 207 KSRIINTIVWQNRY 248
K+R NTIVWQ+R+
Sbjct: 41 KARKYNTIVWQSRH 54
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 24.2 bits (50), Expect = 4.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -3
Query: 290 KNTVEDSHDSLASTIPVLPYY----GVDYSTFSHSTLIIGGE-TEGISEDSYKCASSRN 129
KNT +HD +T P+L Y+ YS S T+ + + GI E+++ + N
Sbjct: 515 KNTTAGNHDVDNNTPPLLVYFPNYPWTYYSNISTFTMSMDDKMANGILENAFMSTTQNN 573
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ELFFYFACNYSCRHTSVQTVYAFYKGNIQSQSI 131
E ++ A SC V+ Y Y+G+ SQ I
Sbjct: 532 ETIYHAALEASCEIAQVEGTYESYEGSPASQGI 564
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 164 SEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIACEIKKQFVQAWS 18
S DS+ ++ R + G D++N G+A ++ E KQ V S
Sbjct: 731 SIDSFADSNVRADTLQRLQNFTGTDAVNVGVAKILMIAETAKQDVDVVS 779
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 59 IACEIKKQFVQAWSKK 12
I C +KK+F+++ SKK
Sbjct: 67 IRCRLKKKFIKSLSKK 82
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 204 AKSRIINTIVWQNRY 248
AK RI++T+VW+ +
Sbjct: 652 AKKRIVDTLVWRRHF 666
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 51 ACNYSCRHTSVQTVYAFYKGNIQSQ 125
AC CRH S +Y K + SQ
Sbjct: 93 ACCNCCRHPSEACLYILNKRKVMSQ 117
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 182 GETEGISEDSYKCASSRNGLRLNIPLIEG 96
GE++ S + C SS G+ ++ PL EG
Sbjct: 152 GESDARSVYAAVCVSSLVGISMDDPLFEG 180
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 233 YYGVDYSTFSHSTLIIGGETEGISEDSYKCAS 138
+ G S SH T I + +++++Y CAS
Sbjct: 17 FAGDSISFISHLTTIHNSSVQTLAKNAYLCAS 48
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 188 IGGETEGISEDSYKCASSRNGLRLNIPL 105
+GG +E +S+D C + L N PL
Sbjct: 92 LGGTSEPVSDDHKDCMEATRQLLENSPL 119
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 51 ACNYSCRHTSVQTVYAFYKGNIQSQSIPTRSTLITILTNTFRFTSYN*SAMAK 209
AC Y +++Q +Y +I S++ T STL + T S N A ++
Sbjct: 505 ACPYPFLSSTLQPLYVSLGPSIGSRNQSTPSTLAPNVAETDALVSENTGAASQ 557
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 215 STFSHSTLIIGGET 174
STFS +T IIGG T
Sbjct: 869 STFSFTTTIIGGTT 882
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Frame = -3
Query: 296 NPKNTVEDSH----DSLASTIPVLPYYGVDYSTF------SHSTLIIGGETEGISE 159
NP N++ +H D P + YG + F SH L++G +SE
Sbjct: 545 NPPNSINSNHYSFDDGSLGYYPSISMYGGGIARFQFGPQFSHRPLVLGSNVRPVSE 600
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 287 NTVEDSHDSLASTIPVLPYYGVDYSTFSHSTLI 189
N + S DSLA+ +PY Y FS+S+ +
Sbjct: 133 NAYDPSSDSLANVYNSVPYGSSPYD-FSNSSFV 164
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 293 PKNTVEDSHDSLASTIPVLPYYGVDYS 213
P N + DS D A + P P++ + +S
Sbjct: 325 PHNNIWDSRDRGAFSAPPAPFFPLGFS 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,691
Number of Sequences: 5004
Number of extensions: 21271
Number of successful extensions: 79
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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