Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2104
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1145 + 24335746-24336299,24336967-24337105,24337634-243376... 32 0.095
11_01_0782 + 6543906-6544702,6545717-6547850 28 1.6
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 1.6
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166... 27 2.7
03_01_0278 + 2136522-2137286 26 4.7
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117... 26 4.7
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 26 6.3
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 26 6.3
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 26 6.3
03_03_0163 - 14971398-14971562,14971638-14971664 25 8.3
02_05_0178 - 26513403-26513983,26515295-26515949 25 8.3
>07_03_1145 +
24335746-24336299,24336967-24337105,24337634-24337695,
24338140-24338278,24338692-24338829
Length = 343
Score = 31.9 bits (69), Expect = 0.095
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -3
Query: 230 YGVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVI 57
Y +D+S + +++G E GIS+D+ K + L ++P+ VDS N +A ++
Sbjct: 235 YDMDWS--QPTAIVVGNELMGISDDALKLSD----LHCSVPMKGMVDSFNVSVAAGIL 286
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -3
Query: 197 TLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVD 90
T+++G ++ +S D +C+ + +G L L+ G+D
Sbjct: 132 TVVVGHQSSPVSSDEQRCSGASDGRNLQADLV-GID 166
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 197 TLIIGGETEGISEDSYKCASSRNGLRLNIPL-IEGV-DSLNTGMATAVIA 54
T +GGE G+ + NG + +E DSLNTGMATA IA
Sbjct: 276 TFELGGEGSGLLAPAESRWPFSNGFGFATWIYVESFSDSLNTGMATAAIA 325
>01_03_0288 -
14714953-14715253,14716317-14716402,14716573-14716686,
14716771-14717140,14717224-14717357,14717512-14717617,
14717733-14717854,14718125-14718231,14718522-14718622,
14719007-14719169,14719559-14719614,14720833-14721152
Length = 659
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 299 SNPKNTVEDSHDSLASTIPVLPYYG 225
++P++T+E DSL+S +P+L +G
Sbjct: 228 TSPQDTLESFSDSLSSMLPLLSEFG 252
>03_01_0278 + 2136522-2137286
Length = 254
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 167 ISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIACEI 45
+S++S K GL+++ + GVD+L + AVIA E+
Sbjct: 134 LSKNSAKVIEGFLGLQVHKGIRNGVDALGVVVKVAVIASEV 174
>02_01_0170 -
1174224-1174321,1174429-1174588,1174673-1174823,
1175005-1175156,1175647-1175768,1176773-1176785
Length = 231
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = -3
Query: 215 STFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIACEIKKQ 36
S F+ +I + + + +N +RL++ ++G D+ + + A IA E K
Sbjct: 129 SDFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSMASLKGADAKDISSSIAAIANEKIKA 188
Query: 35 FVQAWSKKKKK 3
+A + KKK+
Sbjct: 189 EKEAAAGKKKQ 199
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 128 GLRLNIPLIEGVDSLNTGMATAVIACEIKKQFVQAWSKKKKK 3
GL + G+ SLN+ A ++ E++++F + W K KKK
Sbjct: 88 GLVAYVKTPRGLRSLNSVWAQH-LSEEVRRRFYKNWCKSKKK 128
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 128 GLRLNIPLIEGVDSLNTGMATAVIACEIKKQFVQAWSKKKKK 3
GL + G+ SLN+ A ++ E++++F + W K KKK
Sbjct: 88 GLVAYVKTPRGLRSLNSVWAQH-LSEEVRRRFYKNWCKSKKK 128
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 12 FFAPRLNELFFYFACNYSCRHTSVQTVYAFYKGNIQSQSIPTRSTLITILTNTF 173
F P +N F+ A + ++SV+ YKGN+ S+P +++L++ F
Sbjct: 679 FQQPYMNSGLFHQAAA-AVPNSSVKYPLPQYKGNVSLASLPQQASLLSSYVGGF 731
>03_03_0163 - 14971398-14971562,14971638-14971664
Length = 63
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 72 GDSCNCMRNKKTIRSSVEQKKKKK 1
GD+ N M +KK + ++KKKKK
Sbjct: 9 GDTTNFMPSKKKKKKKKKKKKKKK 32
>02_05_0178 - 26513403-26513983,26515295-26515949
Length = 411
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 122 RLNIPLIEGVDSLNTGMATAVIACEIK 42
+L+I +++G+D L+TG+ +I IK
Sbjct: 232 KLSISIVKGLDYLHTGLEKPIIHGNIK 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,455,546
Number of Sequences: 37544
Number of extensions: 118476
Number of successful extensions: 334
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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