Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2104
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     29   0.53 
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)              29   0.70 
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)                   29   0.92 
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         27   2.8  
SB_51551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_41611| Best HMM Match : Hep_Hag (HMM E-Value=2.9e-13)               26   4.9  
SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_24035| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_26532| Best HMM Match : Hep_Hag (HMM E-Value=9.9e-26)               26   6.5  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  26   6.5  
SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)       25   8.6  
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)                       25   8.6  

>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 135 SEWTETE---YSPYRRRRQSEHWYGDSCNCMRNKKTI 34
           + W  TE    SP R++   E WYGDS    R K T+
Sbjct: 434 TSWQTTEPPNMSPKRKQGDEESWYGDSRPKPRRKLTV 470


>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
          Length = 691

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 105 YRRRRQSEHWYGDSCNCMRNKKTIRSSVEQ 16
           +RR R ++H + +S   +RNK T+RSSV Q
Sbjct: 127 HRRIRVTKHQHIESMEEIRNKGTLRSSVPQ 156


>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
          Length = 898

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 236 PYYGVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIPLI 102
           P Y V Y+  SH+      E    S D +K A  + G   N PLI
Sbjct: 352 PIYSVPYTGKSHALTPTPTENSNSSHDKFKRACIQGGAPDNTPLI 396


>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1326

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 227 GVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVI 57
           GVD       TL++G ET  +  D++      + +     L+ GVD+L  G+ T V+
Sbjct: 643 GVDTLVVGVDTLVVGVETLVVGVDTFVVGVDTDVVTGVDTLVVGVDTLVVGVDTDVV 699



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 227 GVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVI 57
           GVD       TL++G ET  +  D++      + +     L+ GVD+   G+ T V+
Sbjct: 585 GVDTLVVGVDTLVVGVETLVVGVDTFVVGVDTDVVTGVDTLVVGVDTFVVGVDTDVV 641


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   FFFFCSTLERIVFLFRMQLQLSPYQCSDCLRLL 103
           F ++CS ++ I+   R    L  +  +DCLRLL
Sbjct: 28  FSYYCSIMQDIMSSERSYDSLPNFTAADCLRLL 60


>SB_51551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 78  SVQTVYAFYKGNIQSQSIPTRSTLITILTNTFRF--TSYN 191
           S++  Y  +KGN  +QSI  R+    I+    R   TSYN
Sbjct: 353 SIERGYTEFKGNFDAQSIVKRALNPPIIAKLIRIIPTSYN 392


>SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -3

Query: 158 DSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIACEIKK 39
           +SY  +++   +R ++P+ +G  S+ +GM+     C+ K+
Sbjct: 588 NSYSPSAASTCVRCSLPVDDGDTSITSGMSNETCQCQNKQ 627


>SB_41611| Best HMM Match : Hep_Hag (HMM E-Value=2.9e-13)
          Length = 422

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 227 GVDYSTFSH-STLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIAC 51
           GVD    +   TL++G +T  +  DS         + ++  ++ GVD+L  G+ T V+  
Sbjct: 276 GVDTDVVTGVETLVVGVDTLVVGVDSLVVGVDTFVVGVDTDVVTGVDTLVVGVDTLVVGV 335

Query: 50  E 48
           +
Sbjct: 336 D 336


>SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 227  GVDYSTFSH-STLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIAC 51
            GVD    +   TL++G +T  +  DS         + ++  ++ GVD+L  G+ T V+  
Sbjct: 883  GVDTDVVTGVETLVVGVDTLVVGVDSLVVGVDTFVVGVDTDVVTGVDTLVVGVDTLVVGV 942

Query: 50   E 48
            +
Sbjct: 943  D 943



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 227  GVDYSTFSH-STLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIAC 51
            GVD    +   TL++G ET  +  D+         + ++  ++ GVD+L  G+ T V+  
Sbjct: 1840 GVDTDVVTGVETLVVGVETLVVGVDTLVVGVDTLVVGVDTDVVTGVDTLVVGVDTLVVGV 1899

Query: 50   E 48
            +
Sbjct: 1900 D 1900


>SB_24035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 227 GVDYSTFSH-STLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSLNTGMATAVIAC 51
           GVD    +   TL++G ET  +  D+         + ++  ++ GVD+L  G+ T V+  
Sbjct: 304 GVDTDVVTGVETLVVGVETLVVGVDTLVVGVDTLVVGVDTDVVTGVDTLVVGVDTLVVGV 363

Query: 50  E 48
           +
Sbjct: 364 D 364



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 227  GVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNI-PLIEGVDS-LNTGMATAVIA 54
            GVD       TL++G +T  +  D+Y   +  + L + +  L+ GVD+ + TG+ T V+ 
Sbjct: 822  GVDTLVVGVDTLVVGVDTLVVGVDTY-VVTGVDTLVVGVDTLVVGVDTDVVTGVETLVVG 880

Query: 53   CEI 45
             ++
Sbjct: 881  VDL 883


>SB_26532| Best HMM Match : Hep_Hag (HMM E-Value=9.9e-26)
          Length = 810

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = -3

Query: 287 NTVEDSHDSLASTIPVLPYYGVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIP 108
           +TV    D+L   +      GV+       TL++G +T  +  D+         + ++  
Sbjct: 120 DTVVVGVDTLVVGVDTDVVTGVETLVVGVETLVVGVDTLVVGVDTLVVGVDTLVVGVDTD 179

Query: 107 LIEGVDSLNTGMATAVIACE 48
           ++ GVD+   G+ T V+  +
Sbjct: 180 VVTGVDTFVVGVETLVVGVD 199


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 93   YAFYKGNIQSQSIPTRSTLITILTNTFRFTSY 188
            Y   +GN+Q +   T +TL  ++T   +FT+Y
Sbjct: 1389 YGPAEGNLQFRKNVTSNTLSAVITGLRKFTNY 1420


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 9   FFFAPRLNELFFYFACNYSCR 71
           +  AP   + FFY AC+ +CR
Sbjct: 173 YLMAPLTGKYFFYTACDDTCR 193


>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
          Length = 268

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 120 TEYSPYRRRRQSEHWYGDSCN 58
           T Y  + +    E WYGDSC+
Sbjct: 39  TRYKTFEQCLCREGWYGDSCD 59


>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
          Length = 1313

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 250  VEARESWLSSTVFFG 294
            VE R SWLS   FFG
Sbjct: 958  VEVRNSWLSKKYFFG 972


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,156
Number of Sequences: 59808
Number of extensions: 146885
Number of successful extensions: 497
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)