Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2104
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    27   1.9  
Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z81555-2|CAB04514.1|  158|Caenorhabditis elegans Hypothetical pr...    26   4.4  
U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z81080-4|CAB03087.2|  224|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    25   7.6  

>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 117 QSQSIPTRSTLITILTNTFRFTSYN*SAMAKSRIINTIVWQNRYS*SQRI-MAIFNCILW 293
           +  S   R      L N+  FT+ N S  A+  II  +V ++  S  QR+ +A   C++ 
Sbjct: 190 EESSANVRFAATNALLNSLEFTNTNFSNEAERNIIMQVVCESTSSSDQRVKVAALQCLVR 249

Query: 294 I 296
           I
Sbjct: 250 I 250


>Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical
           protein T02G6.2 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 200 STLIIGGETEGISEDSYKCASSRNGLRLNIPLIE 99
           ST+ +   +EG +    K A+S NG+ L +P ++
Sbjct: 130 STVRVSVRSEGAANGQIKTANSANGVSLTLPRVK 163


>AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical
           protein C04C3.2 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 49  SHAITAVAIPVFRLSTPSIRGIFS 120
           ++ IT + +P F +S  SI GIFS
Sbjct: 246 TYYITVIVVPTFLISALSILGIFS 269


>Z81555-2|CAB04514.1|  158|Caenorhabditis elegans Hypothetical
           protein F58E10.7 protein.
          Length = 158

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 299 SNPKNTVEDSHDSLASTI 246
           S  KNTV+D+HD L  +I
Sbjct: 23  STAKNTVQDAHDQLTKSI 40


>U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical
           protein F25B4.4 protein.
          Length = 218

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 257 ASTIPVLPYYGVDYSTFSHSTLIIGGETEGISEDSYKCASSRNGLRLNIPLIEGVDSL 84
           AS++P + ++    ST S    I+  +   +SE +YK   S+ G+R N   I   D L
Sbjct: 24  ASSLPFVLHFLSTASTSSQKVAIVSTK---LSETNYKLICSKAGVRWNPTQISFYDFL 78


>Z81080-4|CAB03087.2|  224|Caenorhabditis elegans Hypothetical
           protein F39H2.4 protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 176 TEGISEDSYKCASSRNGLRLNIPLIEGVDS 87
           TE I+ED  KCA+ R  L   +  +   D+
Sbjct: 56  TERIAEDRVKCAAQRESLERQLQDLTATDN 85


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 143 ASSRNGLRLNIPLIEGVDS-LNTGMATAVIACEIKKQFVQAWSKKKKK 3
           AS+RNGL     L+E VDS L  G+  A+     K    + WS K K+
Sbjct: 461 ASTRNGLSEEEVLVENVDSHLRQGI-QAIHQENWKTMHCKNWSLKYKQ 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,861,754
Number of Sequences: 27780
Number of extensions: 117513
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)