Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2104
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.46 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.46 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   0.61 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   0.61 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   1.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 111  NIQSQSIPTRSTLITILTNTFRFTSYN*SAMAKSRI 218
            ++    +   S L T+LT   ++T+Y    +A +R+
Sbjct: 1161 SVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRV 1196


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 111  NIQSQSIPTRSTLITILTNTFRFTSYN*SAMAKSRI 218
            ++    +   S L T+LT   ++T+Y    +A +R+
Sbjct: 1157 SVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRV 1192


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 24  RLNELFFYFACNYSCRHTSVQTVYAFYKGNIQSQSIPTRSTLITILT 164
           R+ +  F FAC  SC +  V   +     N  S    T  T +T L+
Sbjct: 296 RIQKGLFLFACTNSCMNPIVYGAFNIRDRNKTSARPTTIETRVTPLS 342


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 60  YSCRHTSVQTVYAFYKGNIQSQSIPTRSTLITILTNTF 173
           Y  RH +V  +YA   G     S  + S L+ IL   F
Sbjct: 265 YMSRHENVSILYADIVGFTAISSTYSASELVKILNELF 302


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 32  RIVFLFRMQLQLSPYQCSDCLRLL*GEYSVSVH 130
           R+   +R      PYQC  C +    + ++SVH
Sbjct: 106 RLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH 138


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 92  DSLNTGMATAVIACEI 45
           +S NTG A   + C+I
Sbjct: 107 NSFNTGFALGNLGCQI 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,361
Number of Sequences: 438
Number of extensions: 1621
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)