Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2103
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   3.6  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   6.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   8.4  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   8.4  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   8.4  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 408 YIYHTNIFPWAGILTPDARYVSDHGTYHY 494
           Y  HTNI P AG L+ D  +   H   HY
Sbjct: 285 YPVHTNIDPDAGKLSFDDAFYEAHIELHY 313


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 450 LESPPKGRYLYDKYN 406
           LE PPK +YL+ KY+
Sbjct: 57  LEEPPKAKYLHWKYS 71


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 306 SLFETNKQTNFFSL*Y*YRHTY 371
           ++++     NFFSL + YRH Y
Sbjct: 332 NIYDNGFYNNFFSLVFPYRHLY 353


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 389 NPGKDILYLSYKYLPLGGDSNPRRPL 466
           N G+ I+Y   ++ P   DS+P+ PL
Sbjct: 310 NVGRSIVYWEKEFPPSNIDSSPQSPL 335


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 381 TSITLEKTYYIYHTNIFPWAGILTPDARYVS 473
           TS+ LE+    Y+T + PW   +  D  YV+
Sbjct: 415 TSLELEE----YYTKVSPWMSSIVDDVMYVT 441


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 255 CRLLMEKEFFKLVQ*FRSLFETNKQTNFFSL*Y*YR 362
           C++L++  F KL       ++ NK+ NF  L Y YR
Sbjct: 91  CQMLVQMGFAKLTILAFPRYQPNKKDNFSWLEYFYR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,701
Number of Sequences: 5004
Number of extensions: 37169
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)