Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2103
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1088 + 30301654-30303480                                         29   1.6  
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227...    27   8.4  

>03_05_1088 + 30301654-30303480
          Length = 608

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 118 LSGTCNTSSLRTYHGTS*RGVIVSKYLFIYFIYLCSKIK 2
           + G C+  +LR + G + RG+ V +Y  +  +  C ++K
Sbjct: 205 VKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLK 243


>04_03_0812 -
           19922208-19922357,19922448-19922564,19922681-19922752,
           19922864-19923993,19924939-19925008,19925125-19925199
          Length = 537

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 447 ESPPKGRYLYDKYNMSFPGLWMYIKYMYVYTNIIKRKN 334
           ++P  G+Y+  ++++ FP    Y K  +VYT I+K  N
Sbjct: 152 KNPKTGKYV--EHHLKFPPSVPYDKLSHVYTAILKPDN 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,879
Number of Sequences: 37544
Number of extensions: 218187
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)