Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2103
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   6.5  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.6  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_40192| Best HMM Match : DREV (HMM E-Value=0.6)                      27   8.6  
SB_36731| Best HMM Match : F5_F8_type_C (HMM E-Value=0.74)             27   8.6  
SB_25544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 313  SKQTNKQIFSLYNISIDIHIFNIHP*PWKRHIIFIIQISSLGRGF*PPTP 462
            +K  N  +  +   +I   +  +HP  W  HI   +++    +GF  PTP
Sbjct: 1009 NKDRNTIVGHILKPTIFALLLRVHPHTWLGHISIRMELYGCTKGFVVPTP 1058


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +1

Query: 325  NKQIFSLYNISIDIHIFNIHP*PWKRHIIFIIQI--SSLGRGF*PPTPVMLVTMGLTT 492
            N  ++     +I      IHP  W  HI   I++    +GR   PP P    T+  TT
Sbjct: 2345 NTVVYRALRPAIHARFIRIHPLTWVNHISMRIELYGRRVGRPAPPPVPRPPPTIRATT 2402


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 101  HKFFTNLSRDQLTWRD 54
            HKFF ++S D  TW+D
Sbjct: 4581 HKFFISVSNDSKTWQD 4596


>SB_40192| Best HMM Match : DREV (HMM E-Value=0.6)
          Length = 725

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 274 KNFLNWSSSSGAYSKQTNKQIFSLYNISID 363
           KN L+W ++ G Y    +     +Y+IS D
Sbjct: 279 KNILSWQNAKGCYGDDESNDDRDVYDISYD 308


>SB_36731| Best HMM Match : F5_F8_type_C (HMM E-Value=0.74)
          Length = 189

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 101 HKFFTNLSRDQLTWRD 54
           HKFF ++S D  TW+D
Sbjct: 24  HKFFISVSNDSKTWQD 39


>SB_25544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 242 SSGTMSASNGKRIF*IGPVVPEPIRNKQT 328
           SS T SAS    +F  G   P P  NK T
Sbjct: 2   SSNTTSASTATGLFSFGSAAPTPTANKST 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,184
Number of Sequences: 59808
Number of extensions: 257246
Number of successful extensions: 544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)