Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2103
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical...    28   4.3  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    27   5.7  
Z69384-4|CAA93415.1|   75|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical
           protein C05C10.1 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 325 NKQIFSLYNISIDIHIFNIHP*PWK 399
           N+QI  LYN++  +  F ++P  WK
Sbjct: 159 NRQIAPLYNVTTGVDTFYVYPDTWK 183


>AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical
           protein Y59A8B.13 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 244 IRDNVGF*WKKNFLNWSSSSGAYSKQTNKQIFSLYNISI 360
           + D +G  +++ + ++SSSSGA SK     I +  N++I
Sbjct: 191 VLDEMGIGFQRGYTSYSSSSGASSKPPTVTIRARTNVTI 229


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 343 EKKFVCLFVSNRLRNYWTNLK 281
           +KK+VCL+   R   Y TNLK
Sbjct: 475 KKKYVCLYSDGRRLTYHTNLK 495


>Z69384-4|CAA93415.1|   75|Caenorhabditis elegans Hypothetical
           protein T11G6.7 protein.
          Length = 75

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 403 HIIFIIQISSLGRGF*PPTPVMLVTM 480
           H++ ++ +++  +G  PPTP M + M
Sbjct: 5   HLLMLVALATFQKGIVPPTPAMELVM 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,671,669
Number of Sequences: 27780
Number of extensions: 200698
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)