Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2102
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 91 4e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 53 2e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 47 1e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 2e-04
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 38 6e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 34 0.007
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.013
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.62
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.4
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 25 3.3
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 25 4.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 7.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 24 7.7
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 24 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 91.5 bits (217), Expect = 4e-20
Identities = 39/45 (86%), Positives = 43/45 (95%)
Frame = +3
Query: 237 DEEVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 371
+EE+AALV+DNG GMCKAGFAGDDAPRAVFPSIVGRPRH G+MVG
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVG 46
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 52.8 bits (121), Expect = 2e-08
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +3
Query: 255 LVVDNGFGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 365
+ +DNG G KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.8 bits (106), Expect = 1e-06
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +3
Query: 243 EVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVGRP 347
E A +V+DNG G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.5 bits (88), Expect = 2e-04
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 255 LVVDNGFGMCKAGFAGDDAPRAVFPSIV 338
+++DNG G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 37.9 bits (84), Expect = 6e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 240 EEVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVG 341
+EV+A+V+D G + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 34.3 bits (75), Expect = 0.007
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 240 EEVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVG 341
EE+ +LV+D G + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.5 bits (73), Expect = 0.013
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 255 LVVDNGFGMCKAGFAGDDAPRAVFPSIVGRPR 350
LV+DNG +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.62
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 285 KAGFAGDDAP-RAVFPSIVGRPRHQGVMVGWDLRPL 389
KA F+G R+ + VG+P H G++ WD+ L
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWDVSKL 1568
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 1.1
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 YLIKSKLFSLCLQIY*VIVI-TVNGC*RIGASRLVCAVSDISNRGESCDAPVPEFRDLIT 222
Y + S L ++ + IY ++ + + A +++C++ + + G C P+ F I
Sbjct: 699 YRLNSILLTVVMDIYFIVPLHDIRSLAVTTALKMLCSIRENNLDGLVCSLPLSSFIASIL 758
Query: 223 NSRCATKKLPR 255
NSR + L R
Sbjct: 759 NSRKSDNFLKR 769
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.4
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 370 PTITP*WRGLPTMEGNTARGASSPAKPALHIPKPLSTTNAATSSS 236
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 207 EFWDRRVTRFTPIANVT--DRTH*SRCTNPLTTV 112
++WD R + TPIA V+ +R + C +PL TV
Sbjct: 143 KYWDLRQS--TPIATVSLPERVYAMDCVHPLLTV 174
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 127 IGASRLVCAVSDISNRGESCDAPVPEFR 210
+ A R + ++ G SCDA +P+FR
Sbjct: 51 VSAIRKAKRIVVVTGAGISCDAGIPDFR 78
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 186 TRFTPIANVTDRTH*SRCTNPLTTVN 109
T TP+++V T S + PLT+VN
Sbjct: 338 TSSTPLSSVNSTTATSASSTPLTSVN 363
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 237 DEEVAALVVDNGFGMCK 287
D+E L +D GF MCK
Sbjct: 257 DQEFMHLDIDTGFSMCK 273
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 7.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 299 CETGLAHTEAIVYYQRGNFFVAHLELV 219
C HT+ +V++Q NF + ELV
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELV 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,671
Number of Sequences: 5004
Number of extensions: 32089
Number of successful extensions: 100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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