Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2102
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.75 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   0.75 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 168 ANVTDRTH*SRCTNPLTTVNRYHNH 94
           ANV D    SRC N     N ++NH
Sbjct: 403 ANVNDLIRNSRCANFDNQDNNHYNH 427



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 211 DLITNSRCA 237
           DLI NSRCA
Sbjct: 407 DLIRNSRCA 415


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 273 FGMCKAGFAGD 305
           FGMCK G +GD
Sbjct: 129 FGMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 335 DGGEHGARSIISCETGLA 282
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 335 DGGEHGARSIISCETGLA 282
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 199 PEFRDLITNSRCATKKLPRW**TMASVC 282
           P F  ++   R AT +LP    T A +C
Sbjct: 653 PNFVTILALVRDATARLPNGEGTRADIC 680


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,914
Number of Sequences: 438
Number of extensions: 2836
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)