Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2101
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 42 4e-05
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 40 1e-04
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 32 0.039
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 29 0.28
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 28 0.49
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 1.1
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 25 3.4
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 7.9
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 24 7.9
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 41.9 bits (94), Expect = 4e-05
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 148 YPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLAL---LQRAELGITFTKIHC 318
YP L+ V E +RLR +E++ VD + + D L + FTK+
Sbjct: 112 YPVHVLVMKGVDEWKIERLRLDGAEIIMVDQIKTEDLIESGLSIGMGSYRYQYMFTKLSV 171
Query: 319 WNLTQYEKCVFLDADILVIQKL 384
+ TQ++K LD+D+LV++ +
Sbjct: 172 FEQTQFDKVCILDSDLLVLKNM 193
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 40.3 bits (90), Expect = 1e-04
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +1
Query: 148 YPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR----DAAHLALLQRAELGITFTKIH 315
YP V L + + D+L+ + V VD L + D +ALL + + FTK+
Sbjct: 103 YPVVVLAMKGIDQWKLDQLQEDGAIVKVVDPLYAHEVVDDVNDIALLD-SRWSMMFTKLR 161
Query: 316 CWNLTQYEKCVFLDADILVIQKLRLKLFE 402
+ + +Y++ FLD+DIL I+K+ K+F+
Sbjct: 162 VFEMYEYDRICFLDSDILPIKKMD-KVFD 189
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 31.9 bits (69), Expect = 0.039
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Frame = +1
Query: 79 ATNDSYGLGAL-VLAHSLRRAGLV---YPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD 246
+T + Y A VL H L+ YP L V E +R R + V+ +D +
Sbjct: 79 STEEDYYFNATRVLIHRLKYHPTTKSKYPIHILALRGVDEWKIERFRKDGASVIVIDPIA 138
Query: 247 SRDAAHLALLQRAELGIT----FTKIHCWNLTQYEKCVFLDADILVIQKL 384
S D + E+ F+K+ + Q++K +D+DIL+++ +
Sbjct: 139 SSDIVYDTSSFSQEISARYEQMFSKLRIFEQIQFDKICVIDSDILIMKNI 188
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 29.1 bits (62), Expect = 0.28
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 139 GLVYPAVA-LITPTVSEAMRDRLR-AVFSEVVTVDVLDSRDAAHLALLQRAELGITFTKI 312
G + P +A L T VSE D+LR ++++ V++ + + + + + K
Sbjct: 175 GFLLPHLASLTTKNVSEPELDKLRHSLYNWWVSILRRLQSNISTSERITYTKAILAIAKH 234
Query: 313 HCWNLTQYEKCVFLDADILVIQKL 384
HCWN ++ ++L+ +++ L
Sbjct: 235 HCWNKVEHSALLYLEHQLILYDTL 258
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 28.3 bits (60), Expect = 0.49
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 151 PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR 252
P V + +P + D L A +++V+T+DVLD R
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGR 1471
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 303 HKDTLLEPHSVREMRISRCRYIGDPKIAIETL 398
H+ LL HS ++I CR GDP I +E++
Sbjct: 311 HRRKLLTSHST--LKICFCRSRGDPPIVLESI 340
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 124 SLRRAGLVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
+LR+A P V + TV+E +RD V + VVT
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.2 bits (50), Expect = 7.9
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 232 VDVLDSRDAAHLALLQRAELGITFTKIHCWN-LTQYEKCVFLDADILVIQKLRL 390
+D+L+SR + HL L + + +++ N L +Y + + LD D V+ KLR+
Sbjct: 500 MDILNSR-STHLPPLFASLMQHLSCRLNSLNNLVRYIRSMSLDVDRQVLYKLRV 552
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 88 DSYGLGALVLAHSLRRAGLVYPAVALI 168
+S G L L H+LR+ G ++P A +
Sbjct: 312 NSTEFGWLALTHALRKKGAIFPIHAYL 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,713
Number of Sequences: 5004
Number of extensions: 27335
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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