Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2101
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.4  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 163 VLRQGTPSRRGGANGPAPELPSRR 92
           +LRQG P    GA G   ++P  R
Sbjct: 56  LLRQGVPGHHYGAAGSQQDMPYPR 79


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 207 AKTIPHSFTDGRCDECYGRVHQ 142
           +K+  + FT+ RCD  Y R  +
Sbjct: 286 SKSSDYGFTECRCDPGYFRAEK 307


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 247 SRDAAHLALLQRAELGIT 300
           S D+ HL  L + E G+T
Sbjct: 749 SPDSRHLVTLDKQETGVT 766


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 313 HCWNLTQYE 339
           HC+N TQY+
Sbjct: 608 HCFNCTQYQ 616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,786
Number of Sequences: 438
Number of extensions: 1872
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)