Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2099
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    29   0.47 
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.82 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   2.5  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   3.3  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.3  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   7.6  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 85  KDNINKEIERRIANSWKEVLGSKGSNER 2
           KD++N  ++RR  NSW   L SK +NER
Sbjct: 30  KDSVNVALKRRKHNSWNGSLDSK-ANER 56


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 225 LFKMATFGFI*AFNLFDHRTYGFTHCFHGNFATGWSKYFFRRL 353
           LFK A FG I A+ +  ++TY        +    W+K+FF RL
Sbjct: 54  LFKSAAFGAIVAYAIVLYKTYSPNLTSRAS----WNKHFFARL 92


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 154 NNVILLKFIPTYLLKSQQKKKNMFYSKW 237
           +N+ L+KFI  Y L  +   KN+ YSK+
Sbjct: 294 DNLSLVKFICDYFLYRKLSLKNLDYSKY 321


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 292 LRIVSMEISPLVGPNIFLGDSMSPCRLEQAYSLNLTHNL 408
           LRI S E   L+ P +F     +PC +   Y  N T NL
Sbjct: 446 LRIRSYEAGVLLYPKLFEESQRAPCIMTPTYKTN-TPNL 483


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 289 DLRIVSMEISPLVGPNIFLGDSMSPCRLEQAYSLNLTHNLKV*RVKVL 432
           +L I    +    G  +FL  SM+P  LE+A S +L     + ++K L
Sbjct: 21  ELEITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPL 68


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 330 TNQWRNFHGNNA*IHRFGGQTD*RP 256
           TN+W + H   A I RF  Q D  P
Sbjct: 499 TNRWNSLHDTKAKIQRFIDQFDLTP 523


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 304 SMEISPLVGPNIFLGDSMSPCRLEQAYSLNLTHNLKV*RVKVLGLDENQS 453
           S+ IS +    +F+ D M P  L ++ SLN +H     +  ++ +DE  S
Sbjct: 681 SVRISWISQFQLFI-DEMFPDHLSKSLSLNASHEFSFKKTMLILIDEVSS 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,213
Number of Sequences: 5004
Number of extensions: 41143
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)