Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2099
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0148 + 8922959-8923855 28 4.3
01_01_0649 - 4939939-4940835 28 4.3
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 27 5.7
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 27 7.5
12_02_1179 - 26720533-26721021,26721329-26722597 27 10.0
12_02_0278 - 16693580-16693591,16693592-16694476 27 10.0
10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648 27 10.0
09_03_0200 + 13452247-13453170 27 10.0
08_02_0542 + 18374810-18375694,18375781-18376098 27 10.0
08_02_0397 + 16664990-16665874,16665961-16666005 27 10.0
04_04_1671 + 35231546-35232430,35232517-35232837 27 10.0
03_02_0780 - 11131064-11131276,11131444-11131516,11134152-11134513 27 10.0
>05_03_0148 + 8922959-8923855
Length = 298
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYF 341
H T F+H F+G FA SK+F
Sbjct: 53 HETVVFSHFFYGGFALPTSKFF 74
>01_01_0649 - 4939939-4940835
Length = 298
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYF 341
H T F+H F+G FA SK+F
Sbjct: 53 HETVVFSHFFYGGFALPTSKFF 74
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 395 RFREYACSKRHGDIESPKKIFGPTSG 318
+FREY SK I SPK I G + G
Sbjct: 253 KFREYFLSKNFVGIHSPKLIAGSSEG 278
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -3
Query: 262 KAYINPKVAILNRTYFFFFVETLINMWV*ISIILHYFI*QKCIYI 128
K + + ILN F + VE + + + + +I+H + +K IY+
Sbjct: 286 KTALKSTIGILNSLLFVYDVENQVMICLDVPMIIHAMMLRKVIYV 330
>12_02_1179 - 26720533-26721021,26721329-26722597
Length = 585
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 286 MDLRIVSMEISPLVGPNIFLGDSMSPCRLEQAYSLNLTHNLKV*RVKVLGLDENQS 453
+DL I+S EIS ++ D P A+ + T L V R K G D N S
Sbjct: 230 LDLGIISSEISSIIHAMEQFQDDTMPAISIAAFEASETAKLLVGRQKESGHDNNLS 285
>12_02_0278 - 16693580-16693591,16693592-16694476
Length = 298
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYFFRRLN 356
H F+H F+G FA SK+F LN
Sbjct: 53 HEVVVFSHFFYGGFALPTSKFFRGILN 79
>10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648
Length = 400
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYFFRRLN 356
H F+H F+G FA SK+F LN
Sbjct: 53 HEVVVFSHFFYGGFALPTSKFFRGILN 79
>09_03_0200 + 13452247-13453170
Length = 307
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYFFRRLN 356
H F+H F+G FA SK+F LN
Sbjct: 53 HEVVVFSHFFYGGFALPTSKFFRGILN 79
>08_02_0542 + 18374810-18375694,18375781-18376098
Length = 400
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYFFRRLN 356
H F+H F+G FA SK+F LN
Sbjct: 53 HEAVVFSHFFYGGFALPTSKFFRGILN 79
>08_02_0397 + 16664990-16665874,16665961-16666005
Length = 309
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYFFRRLN 356
H F+H F+G FA SK+F LN
Sbjct: 53 HEVVVFSHFFYGGFALPTSKFFRGILN 79
>04_04_1671 + 35231546-35232430,35232517-35232837
Length = 401
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 HRTYGFTHCFHGNFATGWSKYFFRRLN 356
H F+H F+G FA SK+F LN
Sbjct: 53 HEVVVFSHFFYGGFALPTSKFFRGILN 79
>03_02_0780 - 11131064-11131276,11131444-11131516,11134152-11134513
Length = 215
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 332 GPTSGEISMETMRKSIGSVVKQIKGLYKSKGG 237
G + EI+ +T R+SI SVV + S GG
Sbjct: 38 GTSDAEINGKTRRRSINSVVSDLVAKAASNGG 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,180
Number of Sequences: 37544
Number of extensions: 231307
Number of successful extensions: 521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -