Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2099
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    28   2.9  
AF078790-6|AAC26935.1|   51|Caenorhabditis elegans Hypothetical ...    28   3.8  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = -2

Query: 449 WFSSNPKTLTL*TFKLWVRFREYACSKRHGDIESPKKIFGPTSGEISMETMRKSIGSVVK 270
           W  S+P    +  + +W      ACSK H +I+S K        E+ +  +R ++ S  +
Sbjct: 337 WPPSSPDLNPM-DYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFPR 395

Query: 269 QIK 261
           +++
Sbjct: 396 RLE 398


>AF078790-6|AAC26935.1|   51|Caenorhabditis elegans Hypothetical
           protein F36H12.13 protein.
          Length = 51

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 376 ALNDTATLSLLKKYLDQPVAKFPWKQCVNP*VRWSNRLKAYIN 248
           ALND  T+SLLKK +         K+C++   +W N L + ++
Sbjct: 16  ALNDETTMSLLKKIVS--------KKCISKISQWKNELSSNLD 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,254
Number of Sequences: 27780
Number of extensions: 221137
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)