Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2098
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    56   2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    33   0.024
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    31   0.055
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    26   2.7  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    24   8.4  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
           TFQQMWISKQEYDESGP IV+RKCF
Sbjct: 351 TFQQMWISKQEYDESGPGIVYRKCF 375



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 407 VWIGGSILASL 375
           VWIGGSILASL
Sbjct: 339 VWIGGSILASL 349


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 32.7 bits (71), Expect = 0.024
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
 Frame = -1

Query: 370 TFQQMWISKQEYDESGP---SIVHRKC 299
           TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 406 TFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 31.5 bits (68), Expect = 0.055
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 367 FQQMWISKQEYDESG 323
           FQ +W+SKQEYDE G
Sbjct: 404 FQHLWVSKQEYDEVG 418



 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 416 STPVWIGGSILASL 375
           S  VW GGSILASL
Sbjct: 388 SNAVWFGGSILASL 401


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 382 PPSFTFQQMWISKQEYDESGP 320
           P  F FQ++WI  QE  +S P
Sbjct: 12  PNVFCFQELWIECQEVQKSQP 32


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 372 LPSNRCGSRNRSTTSLAPPLYTGSAS 295
           +P       + STT + PPL T S+S
Sbjct: 31  IPPGSLSENDNSTTFIKPPLETASSS 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,210
Number of Sequences: 5004
Number of extensions: 23877
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)