Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2098
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 58 4e-09
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 57 5e-09
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 57 5e-09
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 57 7e-09
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 57 7e-09
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 54 5e-08
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 54 5e-08
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 54 6e-08
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 50 8e-07
12_02_1282 + 27528159-27529148,27529549-27529614 50 1e-06
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 39 0.002
07_03_1380 - 26163993-26164076,26164769-26165365 31 0.50
07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428... 29 1.5
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 29 2.0
03_02_0028 - 5118621-5119448 27 4.6
02_05_0615 - 30364956-30365729,30365813-30366286 27 4.6
09_04_0466 - 17838344-17838631 27 6.1
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512... 27 6.1
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 27 6.1
03_06_0303 - 32994697-32994831,32994959-32995096,32995205-329952... 27 6.1
02_05_0903 - 32630190-32630461,32631084-32631470,32631727-326318... 27 8.1
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 57.6 bits (133), Expect = 4e-09
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISK EYDESGPSIVHRKCF
Sbjct: 350 TFQQMWISKGEYDESGPSIVHRKCF 374
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 57.2 bits (132), Expect = 5e-09
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISK EYDESGP+IVHRKCF
Sbjct: 353 TFQQMWISKDEYDESGPAIVHRKCF 377
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 57.2 bits (132), Expect = 5e-09
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISK EYDESGP+IVHRKCF
Sbjct: 353 TFQQMWISKDEYDESGPAIVHRKCF 377
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 56.8 bits (131), Expect = 7e-09
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISK EYDESGP+IVHRKCF
Sbjct: 356 TFQQMWISKAEYDESGPAIVHRKCF 380
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 56.8 bits (131), Expect = 7e-09
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHRKCF 377
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 54.0 bits (124), Expect = 5e-08
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct: 353 TFQQMWISRAEYEESGPAIVHRKCF 377
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISK EYDESGP IVH KCF
Sbjct: 352 TFQQMWISKAEYDESGPGIVHMKCF 376
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 53.6 bits (123), Expect = 6e-08
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISK EYDESGP IVH KCF
Sbjct: 352 TFQQMWISKGEYDESGPGIVHMKCF 376
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 50.0 bits (114), Expect = 8e-07
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -1
Query: 361 QMWISKQEYDESGPSIVHRKCF 296
QMWISK EYDESGP+IVHRKCF
Sbjct: 370 QMWISKGEYDESGPAIVHRKCF 391
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1
Query: 379 PSFTFQQMWISKQEYDESGPSIVHRKCF 296
PS +MWI+K EYDESGPSIVHRKCF
Sbjct: 324 PSSMKIKMWIAKAEYDESGPSIVHRKCF 351
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -1
Query: 364 QQMWISKQEYDESGPSIVHRKCF 296
Q ++K +YDE+GPSIVH+KCF
Sbjct: 376 QNQHVTKGDYDETGPSIVHKKCF 398
>07_03_1380 - 26163993-26164076,26164769-26165365
Length = 226
Score = 30.7 bits (66), Expect = 0.50
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 274 AATRGAFRSTSCVQWRGQTRRTPVSRSTSVGR*K-REARIDPP 399
AA A R SC + R P +RSTSVG + R +R DPP
Sbjct: 149 AAATAAARPPSCGKESDDDHRPPQARSTSVGNEQHRISRRDPP 191
>07_03_0752 -
21241883-21242233,21242336-21242486,21242586-21242823,
21242917-21243127,21243214-21243344,21245046-21245931,
21246087-21246140,21246397-21246461,21246842-21246892,
21246960-21247029,21247493-21247597
Length = 770
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 261 RAAGGSDARCV*KHFLCTMEGPDS 332
RAAGG ARC+ LC E P S
Sbjct: 675 RAAGGEIARCIHVGLLCVQENPAS 698
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 261 RAAGGSDARCV*KHFLCTM----EGPDSSYSCFEIHICWK 368
RA G CV + FLCT+ +G + C E H+ WK
Sbjct: 301 RALGWDKFACVDEPFLCTLLKVGDGVNFRLFCKEYHLSWK 340
>03_02_0028 - 5118621-5119448
Length = 275
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 339 STTSLA---PPLYTGSASKRTARRCLQQPAAG 253
+TT LA PP + GS +R RR QQP G
Sbjct: 22 TTTLLATDHPPFFPGSCPRRVPRRRPQQPPPG 53
>02_05_0615 - 30364956-30365729,30365813-30366286
Length = 415
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 366 SNRC-GSRNRSTTSLAPPLYTGSASKRTARRCLQQ 265
+N C G +T + APP Y AS RTA R L++
Sbjct: 256 NNDCHGGDPNATAATAPPEYAVRASFRTALRALRE 290
>09_04_0466 - 17838344-17838631
Length = 95
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 277 ATRGAFRSTSCVQWRGQTRRTPVSRSTSVGR*KREAR 387
A +G + WRG+ R P + S+SVGR R R
Sbjct: 10 AEQGHGHWRQALTWRGRWRMRPSTTSSSVGRGWRRTR 46
>07_03_0463 -
18449908-18450171,18450718-18450810,18451170-18451254,
18451607-18451705,18452099-18452238,18453036-18453482
Length = 375
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 194 ITIISYVQLN*RRLQA*IEQPAAGCWR 274
+T + +V L RLQ +E PAA CWR
Sbjct: 245 LTFVPFVVL---RLQKFLESPAATCWR 268
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 259 RGLLEAATRGAFRSTSCVQWRGQ 327
RG +AATRGA RS+S W+ +
Sbjct: 3 RGESKAATRGANRSSSSSSWKSR 25
>03_06_0303 -
32994697-32994831,32994959-32995096,32995205-32995282,
32995399-32995475,32996355-32996676,32996756-32996986
Length = 326
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 336 TTSLAPPLYTGSASKRTARRCLQQPA 259
TT A P+ S+S RRC+ QPA
Sbjct: 4 TTMKASPMSASSSSAPVLRRCVAQPA 29
>02_05_0903 -
32630190-32630461,32631084-32631470,32631727-32631817,
32632320-32632492,32632671-32632842
Length = 364
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 366 SNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQ 265
S+RC R R + APP +A+ CL Q
Sbjct: 82 SDRCNKRQRMAEAAAPPRRPAAAAANEDLHCLLQ 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,524
Number of Sequences: 37544
Number of extensions: 187686
Number of successful extensions: 517
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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