Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2098
(421 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 60 5e-10
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 60 5e-10
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 60 5e-10
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 60 5e-10
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 60 5e-10
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 60 5e-10
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 60 5e-10
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 60 5e-10
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 60 5e-10
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 60 5e-10
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 60 5e-10
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 48 4e-06
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 35 0.021
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 3.1
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 28 3.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 3.1
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 4.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 4.1
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 27 7.2
Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical p... 26 9.5
Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical p... 26 9.5
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 26 9.5
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 26 9.5
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 TFQQMWISKQEYDESGPSIVHRKCF 375
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 339 VWIGGSILASL 349
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 TFQQMWISKQEYDESGPSIVHRKCF 375
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 339 VWIGGSILASL 349
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 308 TFQQMWISKQEYDESGPSIVHRKCF 332
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 296 VWIGGSILASL 306
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 TFQQMWISKQEYDESGPSIVHRKCF 362
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 326 VWIGGSILASL 336
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3
Query: 407 VWIGGSILASL 375
VWIGGSILASL
Sbjct: 340 VWIGGSILASL 350
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKC 299
TFQQMW+SK EYDESG SIV +KC
Sbjct: 412 TFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.021
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -1
Query: 370 TFQQMWISKQEYDESGPSIVHRKCF 296
TF++MW+ K+EY++ G S +H++ F
Sbjct: 350 TFRKMWLGKKEYEDMGASAMHKRFF 374
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 237 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 329
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 340 EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 239
+Y ++G SIV+ KC T R P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 237 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 329
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 396 WIDPRLPLLPSNRCGSRNRSTTSLAPPLYTGS-ASKRTARRCLQ 268
W+ L + S CG +++TT+ A P GS A+ ++A+ LQ
Sbjct: 1131 WVTGSLQTVESISCGYTSQTTTTTALPSACGSCANMQSAKALLQ 1174
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 396 WIDPRLPLLPSNRCGSRNRSTTSLAPPLYTGS-ASKRTARRCLQ 268
W+ L + S CG +++TT+ A P GS A+ ++A+ LQ
Sbjct: 1131 WVTGSLQTVESISCGYTSQTTTTTALPSACGSCANMQSAKALLQ 1174
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 396 WIDPRLPLLPSNRCGSRNRSTTSLAPPLYTGS-ASKRTARRCLQ 268
W+ L + S CG +++TT+ A P GS A+ ++A+ LQ
Sbjct: 1131 WVTGSLQTVESISCGYTSQTTTTTALPSACGSCANMQSAKALLQ 1174
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 396 WIDPRLPLLPSNRCGSRNRSTTSLAPPLYTGS-ASKRTARRCLQ 268
W+ L + S CG +++TT+ A P GS A+ ++A+ LQ
Sbjct: 1131 WVTGSLQTVESISCGYTSQTTTTTALPSACGSCANMQSAKALLQ 1174
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 67 IRFSTYNHHS*DYKKSFGECSTGPAV 144
I F YN S K+ GECST PAV
Sbjct: 516 IAFVEYNSRS-SRKRKAGECSTPPAV 540
>Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -2
Query: 387 PRLPLLPSNRCGSRNRSTTSLAPPLY-----TGSASKRTARRCLQQPAAG 253
PRLP +PS+ S + P++ + S++K+TA + QQ G
Sbjct: 546 PRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSSSAKKTAAQLQQQSMQG 595
>Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -2
Query: 387 PRLPLLPSNRCGSRNRSTTSLAPPLY-----TGSASKRTARRCLQQPAAG 253
PRLP +PS+ S + P++ + S++K+TA + QQ G
Sbjct: 543 PRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSSSAKKTAAQLQQQSMQG 592
>Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -2
Query: 387 PRLPLLPSNRCGSRNRSTTSLAPPLY-----TGSASKRTARRCLQQPAAG 253
PRLP +PS+ S + P++ + S++K+TA + QQ G
Sbjct: 546 PRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSSSAKKTAAQLQQQSMQG 595
>Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -2
Query: 387 PRLPLLPSNRCGSRNRSTTSLAPPLY-----TGSASKRTARRCLQQPAAG 253
PRLP +PS+ S + P++ + S++K+TA + QQ G
Sbjct: 543 PRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSSSAKKTAAQLQQQSMQG 592
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 67 IRFSTYNHHS*DYKKSFGECSTGPAV 144
I F+ YN K+ GECST PAV
Sbjct: 1533 ITFAEYNSRR-SQKREAGECSTPPAV 1557
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 67 IRFSTYNHHS*DYKKSFGECSTGPAV 144
I F+ YN K+ GECST PAV
Sbjct: 1512 ITFAEYNSRR-SQKREAGECSTPPAV 1536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,272,400
Number of Sequences: 27780
Number of extensions: 143397
Number of successful extensions: 365
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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