Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2098
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              27   0.086
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 0.086
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 419 KSTPVWIGGSILASL 375
           K   VWIGGSILASL
Sbjct: 110 KKYSVWIGGSILASL 124



 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 370 TFQQMWIS 347
           TFQQMWIS
Sbjct: 126 TFQQMWIS 133


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 LLEAATRGAFRSTSCVQWRGQTRRTPVSRSTSV 363
           L+    R AF+ T C + R   RR+ V+R + +
Sbjct: 330 LMSIKYRNAFKQTICCKTRIIGRRSWVTRESQI 362


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 367 FQQMWISKQEYDESGPSIVHRK 302
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 395 GSILASLFYLPTDVDLETGVRRV-WPLHC 312
           GSIL   FY+  D D++  +    W + C
Sbjct: 375 GSILVPFFYVQEDDDVKLVLLNFGWQMIC 403


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 304 SCVQWRGQTRRTPVSRSTSVGR*KR 378
           SCV      R+TP SR  S GR +R
Sbjct: 388 SCVACSPPPRQTPPSRKES-GRRRR 411


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 245 IEQPAAGCWRQRRAVR 292
           +   A GCW + R ++
Sbjct: 319 VSDTALGCWNENRPLK 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,927
Number of Sequences: 438
Number of extensions: 1851
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)