Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2096
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    26   9.5  

>SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 228 KLLHFYISPITTQANQLYINI 166
           +++H +I+P  T  NQLYIN+
Sbjct: 147 RVVHRFIAPGETYVNQLYINM 167


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 233  NESSYIFTSHRSRHRRINYILIYRMKIT 150
            + +SY FT HR  H R+ +  ++R   T
Sbjct: 1041 SHNSYFFTCHRPHHCRLCHATLHRCPAT 1068


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,641,482
Number of Sequences: 59808
Number of extensions: 92321
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)