Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2095
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.098
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   0.69 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   4.8  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    24   8.5  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.098
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 220 QYLSDRFIFRIVQFHNHPLISKLEFLSK 303
           +Y+SD FI   + FH+HP  +++   SK
Sbjct: 125 EYVSDEFILSFLPFHDHPFFARILGCSK 152


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 200 GSQHSICRALTGLDFMAPETILKALDCMRSSFLKPATLP 84
           G ++S  R +   DF+AP T +K + C+ S+F+     P
Sbjct: 496 GQKYSDLRDIVD-DFIAPSTFMKTILCVTSAFMPAIRSP 533


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 357  IQT--ITSPNSFFSGASFIWRFL 419
            IQT  I S  +FF GASF+W F+
Sbjct: 2014 IQTYEIYSVCAFFIGASFVWWFM 2036


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 140 ILKALDCMRSSFLKPATLPGSKKKVPK 60
           I K LDC R +  +P TL   K   PK
Sbjct: 290 ITKGLDCGRLARGEPVTLENGKTVYPK 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,026
Number of Sequences: 5004
Number of extensions: 31444
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)