Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2095
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    29   1.0  
Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    27   7.3  
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
           family protein 4 protein.
          Length = 1802

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 181 QIECCDPPLNLRRQYLSDRFIFRIVQFHNHPLISK-LEFLSKKVPSSH 321
           Q+ECC  P+ L++QY     +  +    + P +SK  + + + +P +H
Sbjct: 804 QLECCGSPMFLKQQYGDGYHLTIVYDTTSTPDVSKTTDIIREYIPEAH 851


>Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical
           protein C14A4.4b protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 164 LDFMAPETILKALDCMRSSFLK--PATLPGSKKKV 66
           L F  PE  LK+ +C++ + LK  P T+  +K+K+
Sbjct: 253 LHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKL 287


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 164 LDFMAPETILKALDCMRSSFLK--PATLPGSKKKV 66
           L F  PE  LK+ +C++ + LK  P T+  +K+K+
Sbjct: 253 LHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKL 287


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 164 LDFMAPETILKALDCMRSSFLK--PATLPGSKKKV 66
           L F  PE  LK+ +C++ + LK  P T+  +K+K+
Sbjct: 253 LHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKL 287


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 175 ALQIECCDPPLNLRRQYLSDRFIFRIVQFHNHPLISKLEFLSK 303
           ALQ+    PP  L  + L  R+I  +V+   H L   L  L K
Sbjct: 166 ALQVSSARPPRPLEHKDLKSRWIKNVVKGQAHRLEKALASLEK 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,676
Number of Sequences: 27780
Number of extensions: 169756
Number of successful extensions: 331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)