Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2094
         (436 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   2.0  
UniRef50_O81465 Cluster: T15F16.9 protein; n=6; Arabidopsis thal...    32   6.0  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 77  WWYLLVRTHKRSYNQ*LRKLFCG 145
           WWYL  RTHKRSY++  +  +CG
Sbjct: 571 WWYLPARTHKRSYHR-YQCSYCG 592


>UniRef50_O81465 Cluster: T15F16.9 protein; n=6; Arabidopsis
           thaliana|Rep: T15F16.9 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 477

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 24  PH--PSNRNALLLHGRNRWGGGTYSCGLTRGPTTSNYENYFAGLIFITRCYSFTVE 185
           PH  P   + L   G N WG   + C L +GP   +Y+++ A  +FI     F+ E
Sbjct: 49  PHIIPIGGHFLDYFGTNFWGTTRFMCTLRQGPNYIHYQSFTAFKLFIVVVQVFSNE 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,195,041
Number of Sequences: 1657284
Number of extensions: 8066831
Number of successful extensions: 15666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15665
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)