Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2094
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.2  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   5.0  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   6.7  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   6.7  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.7  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 355 FRLF*HSFTTLRHE*QKEIVFYNNFCSKFN--LISLRIK*TFTQIFLVKYVL 206
           F L+   F   R E  ++ +F N+F S FN  L SL +K T   + L+ Y++
Sbjct: 383 FDLYVSKFNVARKELSEKELFNNSFSSSFNTLLASLLVKPT---LCLISYLM 431


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 63  RNRWGGGTYSCGLTRGPTTSNYENYFAGLIFITRCYSFTVE 185
           R  WG      G T GP  +   N+  GL  I R +   +E
Sbjct: 206 RPGWGISPRGAGYTFGPDIAEAFNHNNGLDLIARAHQLVME 246


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 26   PPFKPKRITASRQK*VGWWYLLVRTHKRSY 115
            PP  P+ IT +     GW Y+L R  K++Y
Sbjct: 1163 PPL-PENITNTEY---GWGYILTRAEKKAY 1188


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  TLQTETHYCFTAEIGGVVVPTRADSQEVLQP 120
           T+ T      + ++   VVPTR++S  +LQP
Sbjct: 452 TISTPVSGRASNDLPSPVVPTRSNSSSILQP 482


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 85  VPPPHLFLP*SSNA 44
           VPPPHL LP +S++
Sbjct: 255 VPPPHLILPTASSS 268


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 133 IILRV*FLLHDAIPSPWKSIVNI 201
           I+L + F+LHD   S W+S+V I
Sbjct: 224 ILLVIMFVLHDGSLSIWQSLVMI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,122
Number of Sequences: 5004
Number of extensions: 35894
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)