Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2094
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   2.2  
02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160...    28   3.8  
01_06_0414 + 29182350-29183812,29184211-29184346                       27   5.0  
09_04_0757 - 19963832-19964866                                         27   6.6  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   SSIVTTAAPPFKPKRITA 55
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>02_05_0579 +
           30114127-30114177,30114691-30115386,30115883-30116083,
           30116354-30116658,30116944-30117073
          Length = 460

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 188 DFHGEGIASCNKNQTRKIIFVITGCRTSCESARVGTTTPPISAV 57
           D++G G AS      R+ I   +GC +S E +R+ + +  I  V
Sbjct: 125 DWNGHGAASSAAGHKRQTINCYSGCPSSAELSRIWSFSMDIPTV 168


>01_06_0414 + 29182350-29183812,29184211-29184346
          Length = 532

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 132 NYFAGLIFITRCYSFTVEVNCEHLLSTYFTRKICVNV 242
           NY   ++ +T  YSF VE+  ++++  YF  +  VN+
Sbjct: 254 NYRGWILALTYGYSFGVELTIDNVVHQYFYDRFDVNL 290


>09_04_0757 - 19963832-19964866
          Length = 344

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 100 SPHE*VPPPHLFLP*SSNAFRFEGWGS 20
           SP+E  PPPH        A R  GWGS
Sbjct: 124 SPYESFPPPHTAALLHPAAARPRGWGS 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,875
Number of Sequences: 37544
Number of extensions: 208797
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)