Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2094
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 147 LIFITRCYSFTVEVNCEHLLSTYFTRKICVNVYFILKEIRLNLEQKLL*KTISFCHS 317
           LIF      F VE+N     S     +I + +     E+R++  + LL K I FC+S
Sbjct: 185 LIFPNEENIFPVEMNTMFENSDVLVHQIALRIVAKFAELRMDRREYLLLKMIDFCNS 241


>Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical
           protein T27A8.1 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 159 TRCYSFTVEVNCEHLLSTYFTRKIC-VNVYFILKEIRL 269
           T C+  TVE+NCE    T   R +   N Y +LK I L
Sbjct: 316 TNCFEVTVEMNCEKFPQTKKLRYLWEENKYALLKFIDL 353


>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  PTLQTETHYCFTAEIGGVVVPTRADSQEVLQPVITKIIL 141
           P      ++ ++  +GG    T A+S EVL  ++T +I+
Sbjct: 149 PIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,222,499
Number of Sequences: 27780
Number of extensions: 202831
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)