Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2093
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.48 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   2.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   2.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   4.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   4.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.9  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 200 RWLFLTQPVLNKKYNIFVEYHPKSRFLK 117
           R +F  +P L  KY   ++ H K+ FLK
Sbjct: 281 RCIFSLRPGLTHKYTHEIKLHDKTPFLK 308



 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 199 LTHVTTSKTVIGVLNCSHK 255
           L + TT K ++GV+   HK
Sbjct: 640 LNYTTTEKELLGVIFALHK 658


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 212 VTCVRWLFLTQPVLNKKYNIFVEYHPKSR 126
           +  V+ L +   +LNK+ N  +EY  K++
Sbjct: 458 IELVKMLKIRFVILNKQINNLIEYFQKNK 486


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 212 VTCVRWLFLTQPVLNKKYNIFVEYHPKSR 126
           +  V+ L +   +LNK+ N  +EY  K++
Sbjct: 183 IELVKMLKIRFVILNKQINNLIEYFQKNK 211


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 478 RNAVLVQYKIHKFFPAP*MNLFYDRFEMILNALNCVNVKFNNYSEFS 338
           +  +L+ YKI + FP    N+    F         +NV  NNY +FS
Sbjct: 279 KTTLLLAYKIRQVFPNEKKNI--SEF---------INVVLNNYPDFS 314


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 89  YNKTNNLIEFNEPCFFLQI 33
           +NK  NLI+    CF LQI
Sbjct: 216 HNKICNLIDEFNECFGLQI 234


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 97  LLTIFHIFKNLLFG*YSTKILYFL 168
           LL +  IFKNLL   Y   + Y L
Sbjct: 389 LLQVAQIFKNLLENHYEEFVRYEL 412


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,868
Number of Sequences: 336
Number of extensions: 1639
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)