Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2093
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    28   0.64 
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   1.5  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   3.4  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    25   4.5  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   5.9  

>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 475 NAVLVQYKIHKFFPAP*MNLFYDRFEMILNALNCVNVKFNNYSEFSLSSVKTL 317
           N   V   IH + P   + ++   F +++ A+N ++VK+    EF LS+VK L
Sbjct: 142 NLTAVGIVIHYWRPDLNVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVKIL 194


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 391 RSFQSDHKTNSFKGLGKIYVFYIG 462
           RSF S H + SF GLG + +F  G
Sbjct: 156 RSFPSGHTSFSFAGLGFLAIFLAG 179


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 230 ITVLLVVTCVRWLFLTQPVLNKKYNIFVEYHP 135
           I V L + C+  L+L  P  N++   F+  HP
Sbjct: 201 IAVNLGIACLNGLYLISPFCNQQPLSFINRHP 232


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 280 NSNWESFKIYVNSLRH 233
           +SNW+S  +YVN LR+
Sbjct: 199 SSNWDSALLYVNRLRY 214


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 433 AP*MNLFYDRFEMILNALNCVNVKFNNYSEFSLSSVKTLFSSDEKILG 290
           AP + L   RF+++LN    VN+ F N SE  +SS   +   DE++ G
Sbjct: 103 APSIPLLGVRFDIMLNP---VNIGFTNLSENPISSASGM---DEELEG 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,063
Number of Sequences: 5004
Number of extensions: 26360
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)