Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2093
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.2 protein.
          Length = 1334

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = -2

Query: 463 VQYKIHKFFP---AP*MNLFYDRFEMILNALNCVNVKFNNYSEFSLSSVKTLFSSDEKIL 293
           +  KIH+  P   AP +   Y  F+  L  L        ++ E S S ++T F     IL
Sbjct: 581 IAMKIHRRLPTLQAPQVQRLYSTFQFQLWEL------LPSFCE-SPSDLETAFPDIAPIL 633

Query: 292 GC*LNSNWESFKIYVNSLRHLLRFC 218
           G  LN   +     +N++R  LRFC
Sbjct: 634 GAALNERKDLRMTVLNAIRRALRFC 658


>Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57G11C.7 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 43  KKHGSLNSIKLFVLL--YYYLLTIFHIF 120
           K    LNSIK+FV L  Y + + ++HIF
Sbjct: 294 KLKDELNSIKMFVFLIAYPFFIKVYHIF 321


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 460 QYKIHKFFPAP*MNLFYDRFEMILNALNCVNVKFNNYS 347
           Q  IH F P   +++F+D FE +  A N      +N+S
Sbjct: 169 QNGIHSFIPCQLIDIFHDYFETVQKAHNNGIADISNFS 206


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = -2

Query: 376 CVNVKFNNYSEFSLSSVKTLFS---SD-----EKILGC*LNSNWESFKIYVNSL 239
           C N  F N+ EF++  +K  F+   SD       I    LN     F+ YVN L
Sbjct: 585 CANASFENFIEFNVKYLKKTFNKWKSDRLYLLHSIFSILLNQTRRGFRNYVNRL 638


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 191 FLTQPVLN---KKYNIFVEYHPKSRFLKI*NIVN 99
           +LT P+L    KKY   V YHP   FL + N+V+
Sbjct: 28  YLTFPILFIILKKYAFKVYYHPNLVFLMMLNVVS 61


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 191 FLTQPVLN---KKYNIFVEYHPKSRFLKI*NIVN 99
           +LT P+L    KKY   V YHP   FL + N+V+
Sbjct: 28  YLTFPILFIILKKYAFKVYYHPNLVFLMMLNVVS 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,843
Number of Sequences: 27780
Number of extensions: 139993
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)