Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2093
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.0  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 281 KFKLGKF*NLCEQFKTPITVLLVVTCVRWLFLTQPVLNKKYN 156
           KFK  ++ ++CE+    +++ L  T V+  F  +    KK N
Sbjct: 26  KFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 67


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 206 CVRWLFLTQPVLNKKYNIFV 147
           CV W+F T   L    N+F+
Sbjct: 77  CVIWIFSTSKSLRTPSNMFI 96


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 206 CVRWLFLTQPVLNKKYNIFV 147
           CV W+F T   L    N+F+
Sbjct: 77  CVIWIFSTSKSLRTPSNMFI 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,250
Number of Sequences: 438
Number of extensions: 1913
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)