Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2091
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   3.1  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   5.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   5.5  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   7.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   7.2  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    24   9.5  

>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 47  HVFCSLNISTRNLVDYYQSRQSDFWKIIG 133
           H+   + I   +L+DY +   S F KIIG
Sbjct: 419 HMVTMMGIHPNSLLDYLEQYNSSFDKIIG 447


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 93  IIKAGNLTFGKLLVNQKDELLTLYSIGSHKTLRNHIL 203
           ++K G+ T     + + D L+++Y    HK+L  HI+
Sbjct: 24  LVKDGSNTIDD--IGKTDRLVSIYPNEKHKSLEGHIV 58


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 344 QRCQYVHLAKKCY*YVNTD*F*YNRLL 264
           Q CQY  L+  C+ Y+N D + Y + L
Sbjct: 132 QACQYFQLSAGCFRYIN-DFYIYTKSL 157


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 SDFWKIIGKSERRIIDFVFHWQSQNSSEPHLR 205
           S+  K IGK +R+++  VF    Q   EP+ R
Sbjct: 296 SESSKSIGKKQRKVLHQVFRNVLQTIEEPNAR 327


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 41  FDHVFCSLNISTRNLVDYYQSRQ 109
           + HVFC + +  RNL D     Q
Sbjct: 649 YAHVFCFITLGQRNLYDVLYETQ 671


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 41  FDHVFCSLNISTRNLVDYYQSRQ 109
           + HVFC + +  RNL D     Q
Sbjct: 649 YAHVFCFITLGQRNLYDVLYETQ 671


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 71  STRNLVDYYQSRQSDFWKIIGKSERRIIDFVFHWQSQNSSEPHLR 205
           + ++ + YY S Q D  K+  +  RR+ + V H  +QN     LR
Sbjct: 309 TAKHNIPYYMS-QKDLDKLSSRDIRRLNEKVEHTYTQNVHNACLR 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,881
Number of Sequences: 5004
Number of extensions: 27989
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)