Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2091
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     29   1.3  
04_03_0811 - 19909128-19912214                                         27   5.3  

>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 71  STRNLVDYYQSRQSDFWKIIGKSERRIIDFVFHWQ 175
           S    +D+Y+S Q   W+  GK E+ + + + H Q
Sbjct: 265 SNDKTLDFYRSWQQGRWRFFGKHEQDVFNLIKHEQ 299


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 32  CCNFDHVFCSLNISTRNLVDYYQSRQSDFWKIIGKSERRI 151
           C     +F S NI+TR LV+Y +  Q DF+  I + +  I
Sbjct: 687 CIEDSRLFYSFNINTRRLVEYGEFFQ-DFYVQIAQCKTNI 725


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,728,172
Number of Sequences: 37544
Number of extensions: 143175
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)